Sequence detailsbmy_19336 (Coding sequence)

Part of scaffold_2023 (SequenceType object (1))

For more information consult the page for scaffold_2023 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RAI1ENSTTRG00000014922 (Bottlenosed dolphin)

Gene Details

retinoic acid induced 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000014150, Bottlenosed dolphin)

Protein Percentage 88.92%
cDNA percentage 90.06%
Ka/Ks Ratio 0.26477 (Ka = 0.0613, Ks = 0.2314)

RAI1ENSBTAG00000004768 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000006264, Cow)

Protein Percentage 91.68%
cDNA percentage 91.12%
Ka/Ks Ratio 0.09901 (Ka = 0.0392, Ks = 0.3962)

RAI1 (Minke Whale)

Gene Details

retinoic acid induced 1

External Links

Gene match (Identifier: BACU005272, Minke Whale)

Protein Percentage 53.94%
cDNA percentage 64.15%
Ka/Ks Ratio 0.29033 (Ka = 0.4321, Ks = 1.4883)

Additional orthologs identified in other species via the OPTIC pipeline.

RAI1 (Human)   Rai1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 4821 bp    Location:168017..181209   Strand:+
Raw sequence 
>bmy_19336
GACGGCAGCCCCTACCCCGGCCGCTACTCGGGGGAGGAGGGCCTGCAGGCCTGGGGGGCACCGCAGCCACCACCCCCGCAGCCGCAGCCCCTGCCAGGGGCGGTGGGCAAATATGACGAGAACCTGATGAAAAAGACAGCAGCGCCCCCCGCCCGGCAGTACCCAGAGCAGGGTGCCCAGCTGCCCTTTCGGACTCACACCCTCCACGTCCAGCAGCAGCTGCCGCAGCCCCCGCAGCCCCTGGCGTACCCCAAGCTCCAAAGGCAGAAGCCCCAGAACGACCTCGCCTCGCCCCTGCCCTTCCCCCCGGGCAGCCACTTCCCCCAGCACTCCCAGTCCTTCCCCGTCTCCTCCACCTATTCCTCCCCCGGCCAGGGCGGCGGGCAGGGGGCCCACTCCTACAAGAGCTGCACGGCCCCGTCCACCCAGCCCCACGACAGGCCGCTGACCGCCAACGCCGGCCTGGCCCCGGGCCAACGGGTCCCAAGCCTTCACGCCTACCAGCCTGGGCGCCTCAGCTACGAGCCACAGAAGCAGCAGCAGCAAGCCCTCCAGAGCCGCCACCACGCCCAGGAAACCCTCCACTACCAAAACCTCACCAAGTACCAACACTACGGGCAGCAAGGCCCGGGCTACTGCCAGCCGGACGCGGCCGTCAGGACCCCGGAGCAGTACTACCAGACCTTCAGCCCCGGCTCCAGCCACTCGCCCGCTCGCTCGGTGGGCCGCTCCCCTTCCTACAGCTCCACCCCGTCGCCGCTGATGCCCAACCTGGAGAACTTTCCCTACAACCAGCAGCCGCTCGGCCCTGGAGCCTTCCCCGCCGGTCTCGCGGACCACAGCCACTTCATGCCCCTGCTCAACCCCTCCCCGACGGATGCCGCCGGCTCCGTGGACGCCCAGGCCGCCAACTGCAAGGCCCTGCAGAAGGACAAGCTTCCCGAGAGCCTGCTGTCGGACCTCAGCCTGCACAGCCTCACGGCGCTGACCTCGCAGGTGGAGAACATCTCCAACACCGTGCAGCAGCTGCTGCTCTCCAAGGCGGCCGTGCCCCAGAAGAAGGGCCCCACCCTGGGGGCCGCCGCCTCGGACCCCGCCGCGGCGCCTTTCGACTGCTTCCCAGACGCGACCACCGCCAGCTCGGCGGACGGCACCAACCCCTTCGCCTGGCCCGAGGAGAACCTGGGGGACGCCTGTCCCCGGTGGGGGCTGCACCCCAGCGAGCTCGCCAAGGGTCTGGAGCAGGGCGGGAAAGCCGCCGACAGTGTCGGCCAGGAGGACGCCCGCGAGGCTTCCGCCTGCCTGGGCTTCCAGGAGGAGCAGCCCTCGGGGGAGAAGGCCGTGGTGCCCCGGGACTCCCAGCAGGAGGAGGGGGGCGGGGTGAAAGAGGAGGCGGGCGGGCTGCTGCAGTGTCCCGAGGTGGGCAAGGCCGACCAGTGGCTGGAGGACAGCCGGCACTGCTGCTCCGCCGCCGACTTCGGGGACCTCCCGCTGCTGCCGCCCGCCGGCAGGAAGGAGGACTTGGAGGCGGAGGAGTACTCGTCTCTGTGCGAGCTCCTGGGCAGCCCCGAGCAGAGGCCGGGCGTGCAGGACCCACTGTCGCCCAAGGCCCCGCTGCTGTGTGGCAAGGAGGAGGTGGAGGCCGTGCTGGACCCCAAGGCCGGCTGGGGCTCCCCGTGCGCCCTCTCTGGCGAGGCCGTCATCCTGCTGGGCCCCACCGTGGGCACCGAGTCCAAGGTCCAGAGCTGGTTCGAGTCCTCCCTCTCCCACATGAAGCCAGGGGAGGAGGGGCCCGAGGGGGCGCTGGCTCCGGGGGATCCCACCGCCCTGGCCCCGGAAGCCTCCCTGACCCAGAAGCCGAACAAGCCCGCTGTGCCCGAGGCGCCCATCGCCAAGAAGGAGCCTGTGCCTCGCGGCAAAAGCTTACGGAGCCGGCGGGTGCACCGGGGGCTGCCCGAGGCCGAGGACTCCCCGTGCAGGGCCCCGGCGCTGCCCAAAGACCTGCTGCTCCCTGAGTCGTGCACGGGGCCCCCCCAGGGACAGATGGAAGGGGCGGGGGCCCCAGGCCGGGGGTCCTCGGAAGGGCTCCCCAGGATGTGCACCCGCTCCTTCACGGCCCTGAGTGAGCCCCGCACGCCCGGACCCCCGGGCCTGCCCACCACCCCTGCCCCCCCAGACAAGCTGGGAGGCAAGCAGCGAGCTGCCTTCAAGTCGGGCAAGCGAGTGGGGAAGCCCTCCCCCAAGGCCGCATCCAGCCCCAGCAACCCGGCCGCCCTGCCCGTGGCCTCCGACAGTAGCCCCATGGGCTCCAAGACCAAGGAGACAGACTCGCCGGATGCACCAGGCAAAGACCAGCGCTCGATGATCCTCCGGTCCCGCACCAGGACCCAGGAGGCCTTCCACTGCAAGCGGCGGCGGGCCTCGGAGAGCCGGCTCCCCAACTGCCGCGCCGCCAAGAAGCTCCTCGCCAACAACCACCTGCCCGCCACGTTCAAGGTCGCCGGTAGCCCCCAGAAGGAGGGCAGGGCGGGCCAACGGGCGAGGGTCCCCAAGCCTGGTGCAGGCGGCAAGCTCTCCGATCGGCCCCTCCAYGCCCTCAAGAGGAAGTCGGCCTTCATGGCACCTGTCCCCACCAAGAAGCGCAACCTGGTCTTACGCAGCGGCAGCACCGGCGGGGACACGAAGGAGGAGGAGGGGGCCGAGGGCTCTCCCACCCTCTTCAAGAGGATGATGTCTCCCAAGAAGGCCAAGCCCGCCAAGGGCAACAGTGAGCCCACGGCAAAGCCGCCGCCCCCGGAGACCCCTGACGCCAGCCTGAAGCTGGCCTCACGGGCGTCCGTCCAGGGGGCCATGAAGACCAAGGTGCTGCCCCCCCGGAAAGGCCGGGGCTTGAAGCTGGAGGCCATCGTGCAGAAGATCACCTCGCCCAGCCTGAAAAAGTTCGCGTGCAGAGCACCAGGGGCCCCTCCCGGGAATCCTCTGAGCCCATCCCTCCCCGAGAAGGACCGTGGGCTCAAGAGCGCAGGGGGTAGCCCGCTGGGGGCAGAAGAAGGTCTCTTGAACGTGAGCACTGGGCAGAAGTTCCCAGCAGCTTTGGGGGCTGATCCGTTATGCAGAAATCCGACCAACAGATCCTTAAAAGGCAAACTCGTGAACAGTAAGAAACTGTCCTCGACCGATGGTTTCAAAACTGACGCCTTCATGTCCCCAGAGGGCCTGCTGCCCGGGGGCACTGCCCTGGCACCTAAGAAGAGAAGCCGGAAAGGCAGGGCTGGAGCCCTCGGACTCCCCAAAGGCTCCCTGGAGAAGAGGCCTCATCTCGGCCCAGCTCTGCTCCTGACGGCCAGCAGCACGCAGGGGGGCAGCGAGGACAGCTCTGGCGGAGGCGGCAAGAAGCCAAAGACGGAGGAGCTGGGGCTGGCCTCCCAGCCCCCTGAGGGCCGGCCCTGCCAGCCCCAGGTGAGGGCACAGAAGCAGCCTGGCCACGCCAACTACAGCAGCTATTCCAAGCGGAAGCGCCTGACGCGGGGCCGGGCCAAGAACACCACCACCTCACCCTGTAAGGGGCGTGCCAAGCGGCGGCGGCAGCAGCAGGTGCTGCCCCTGGATCCCGCAGAGCCTGAAATCCGCCTCAAATACATTTCCTCCTGCAAGCGGCTGCGAGCAGACAGCCGCACCCCCGCCTTCTCGCCCTTCGTGCGGGTGGAGAAGCGGGATGCATTCACCACTGTATGCACTGTTGTCAACTCCCCCGGAGAGGAGCCCAAGCCCCACAGGAAGCCTTCCTCCTCCTCTTCATCCTCTTGCTCCTTCTCCTTGGACGCGGCCGGGGCCTCCCTAGCCACGCTCCCTGGAGGCTCCATCCTGCAGCCTCGGCCCTCCCTGCCCCTCTCCTCCACCATGCATCTGGGGCCCGTGGTCTCCAAGGCCCTGAGTACCTCTTGCCTTGTTTGCTGCCTCTGCCAAAACCCGGCCAACTTCAAGGACCTCGGGGACCTCTGTGGGCCCTACTACCCCGGACACTGCCTCCCCAAAAAGAAGCCAAAACTCAAGGAGAAGGTGCGGCCAGAGGGCACCTGCGAGGAGGCCTCGCTGCCTCTTGAGAGGACACTCAAAGGCCTCGAGTGCCCAGCTGCCGCCGCCACCGCCACCGCCACCGCCACCGGGAAGCCCCCCAGGCCTGACGGCCCAGCCGATCCGGCCAAGCAGGGCTCCCTGCGCACCAGCGCCCGGGGCCTGTCCCGGCGGCTGCAGAGTTGCTACTGCTGTGACGGTCGGGGGGAAGGTGGTGAAGAGACAGCCCCAGCTGACAGGAGCCGCAAGCACGAGTGCAGCAAGGAGCCGCCGGCAGAGCCTGGCGGGGACACGCAGGAGCATTGGGTGCACGAGGCCTGTGCCGTGTGGACGGGCGGGGTCTACCTGGTGGCCGGGAAGCTCTTTGGGCTGCAGGAGGCCATGAAGGTGGCCGTGGACATGACTTGTTCCAGCTGCCAAGAAGCCGGGGCCACCATCGGGTGCTGCCACAAAGGATGCATCCACACCTACCATTACCCGTGTGCCAGCGATGCGGGTTGCATATTCATCGAAGAGAACTTTTCTTTGAAATGCCCCAAACATAAGGTGGGTGACCGCGAGCCTCCCCTGAAGGAGCCCAGGCTGGAGAGGAGCCCCCGCCGCAGGGCTGCCGGCTCCGGGCGGACCAGGCGGGGGCGGGTCGGCACGGACGGGCCCCGGGCCACTTATACACCCCCGCACGTGCGGGAGGCGGGGCCAGCCCAGGGCGGGGCGGGGCACGGGGACCGCCCTACAGGCAAAGCCGCA

Related Sequences

bmy_19336T0 SequenceType object (3)

Length: 1607 aa      View alignments
>bmy_19336T0
DGSPYPGRYSGEEGLQAWGAPQPPPPQPQPLPGAVGKYDENLMKKTAAPPARQYPEQGAQLPFRTHTLHVQQQLPQPPQPLAYPKLQRQKPQNDLASPLPFPPGSHFPQHSQSFPVSSTYSSPGQGGGQGAHSYKSCTAPSTQPHDRPLTANAGLAPGQRVPSLHAYQPGRLSYEPQKQQQQALQSRHHAQETLHYQNLTKYQHYGQQGPGYCQPDAAVRTPEQYYQTFSPGSSHSPARSVGRSPSYSSTPSPLMPNLENFPYNQQPLGPGAFPAGLADHSHFMPLLNPSPTDAAGSVDAQAANCKALQKDKLPESLLSDLSLHSLTALTSQVENISNTVQQLLLSKAAVPQKKGPTLGAAASDPAAAPFDCFPDATTASSADGTNPFAWPEENLGDACPRWGLHPSELAKGLEQGGKAADSVGQEDAREASACLGFQEEQPSGEKAVVPRDSQQEEGGGVKEEAGGLLQCPEVGKADQWLEDSRHCCSAADFGDLPLLPPAGRKEDLEAEEYSSLCELLGSPEQRPGVQDPLSPKAPLLCGKEEVEAVLDPKAGWGSPCALSGEAVILLGPTVGTESKVQSWFESSLSHMKPGEEGPEGALAPGDPTALAPEASLTQKPNKPAVPEAPIAKKEPVPRGKSLRSRRVHRGLPEAEDSPCRAPALPKDLLLPESCTGPPQGQMEGAGAPGRGSSEGLPRMCTRSFTALSEPRTPGPPGLPTTPAPPDKLGGKQRAAFKSGKRVGKPSPKAASSPSNPAALPVASDSSPMGSKTKETDSPDAPGKDQRSMILRSRTRTQEAFHCKRRRASESRLPNCRAAKKLLANNHLPATFKVAGSPQKEGRAGQRARVPKPGAGGKLSDRPLHALKRKSAFMAPVPTKKRNLVLRSGSTGGDTKEEEGAEGSPTLFKRMMSPKKAKPAKGNSEPTAKPPPPETPDASLKLASRASVQGAMKTKVLPPRKGRGLKLEAIVQKITSPSLKKFACRAPGAPPGNPLSPSLPEKDRGLKSAGGSPLGAEEGLLNVSTGQKFPAALGADPLCRNPTNRSLKGKLVNSKKLSSTDGFKTDAFMSPEGLLPGGTALAPKKRSRKGRAGALGLPKGSLEKRPHLGPALLLTASSTQGGSEDSSGGGGKKPKTEELGLASQPPEGRPCQPQVRAQKQPGHANYSSYSKRKRLTRGRAKNTTTSPCKGRAKRRRQQQVLPLDPAEPEIRLKYISSCKRLRADSRTPAFSPFVRVEKRDAFTTVCTVVNSPGEEPKPHRKPSSSSSSSCSFSLDAAGASLATLPGGSILQPRPSLPLSSTMHLGPVVSKALSTSCLVCCLCQNPANFKDLGDLCGPYYPGHCLPKKKPKLKEKVRPEGTCEEASLPLERTLKGLECPAAAATATATATGKPPRPDGPADPAKQGSLRTSARGLSRRLQSCYCCDGRGEGGEETAPADRSRKHECSKEPPAEPGGDTQEHWVHEACAVWTGGVYLVAGKLFGLQEAMKVAVDMTCSSCQEAGATIGCCHKGCIHTYHYPCASDAGCIFIEENFSLKCPKHKVGDREPPLKEPRLERSPRRRAAGSGRTRRGRVGTDGPRATYTPPHVREAGPAQGGAGHGDRPTGKAA