Sequence details bmy_19337 (Coding sequence)

Part of scaffold_2023 (Scaffold)

For more information consult the page for scaffold_2023 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SREBF1 ENSTTRG00000014935 (Bottlenosed dolphin)

Gene Details

sterol regulatory element binding transcription factor 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000014168, Bottlenosed dolphin)

Protein Percentage 83.58%
cDNA percentage 85.09%
Ka/Ks Ratio 0.37694 (Ka = 0.0445, Ks = 0.1181)

SREBF1 ENSBTAG00000007884 (Cow)

Gene Details

sterol regulatory element-binding protein 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000010372, Cow)

Protein Percentage 90.73%
cDNA percentage 90.49%
Ka/Ks Ratio 0.14387 (Ka = 0.0472, Ks = 0.3282)

SREBF1  (Minke Whale)

Gene Details

sterol regulatory element binding transcription factor 1

External Links

Gene match (Identifier: BACU005271, Minke Whale)

Protein Percentage 94.28%
cDNA percentage 95.74%
Ka/Ks Ratio 0.5158 (Ka = 0.0365, Ks = 0.0708)

Additional orthologs identified in other species via the OPTIC pipeline.

SREBF1 (Human)   Srebf1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 3501 bp    Location:200005..182547   Strand:-
Raw sequence 
>bmy_19337
GCCGCCTGGGAGCCCAGTTGCCGAGGAACTTTTCGCGGGCGCCGGGCCTCACTGAGGCCAGGGCGTGACGCGAAGTCGCGGAGCGGCGGCGGCGGGCCGGGTGGGCCGCCGGGAGGAGGCGACTGCGCCATGGACGAGCCACCCTTCAGCGAAGCGGCCTTGGAGCAGGCGCTGGCCGAGCCGAGCGAGCTGGACGCGGCGCTGCTGACCGACATCGAAGACATGCTTCAGCTTATCAACAACCAAGACAGCGACTTCCCGGGCCTGTTCGAGCCGCCCTTCGCTGGGGGCGGAGCAGGGGGCACAGACCCCGCCAGTCCAGATGCCAGCTCCCCAGGCAGCCTGTCCCCACCTCCTTCCACGATGAGCTCCCCACTCGAAGGCTTCCTGGGGGGGACCAAGGCGACAACCCCACCCTTGTCCCCTCCCCAGCCTGCACCCACCCCCCTGAAGATGTACCCTTCCGTGCCTGCCTTCTCCGCGGGGCCTGCTATCAAGGAGGAACCAGCGCCCCTGACCACCCTCCAGCCGCTGCCGGGGGCTCTCCTGCCCCAGCGCCTTCCGGCCCCAGCCCCACCGCAGTTCAGCTCTGCCCCTGTGTTGGGCTATCCCAGCCCTCCTGGAGGCTTCTCCACAGGGGTCCCGCCCGTCTCCTTGCACAACCAGGTCCAGAGTGCGGCTCCCCAGCAGCTGTTGACGGCCACAGCCACCCCGACGGTGGCCCCTGGAACAACCACTGTGACCTCACAGGTCCAGCAGGTCCCGGTCCTGCTGCAGCCCCACTTCATCAAGGCAGACTCGCTGCTCCTGACGACTGTGAAAACAGACGTGGGAGCCCCCATGAAGGCGGCAGGCATCAGCTCCCTGGCCCCTGGCATGGCTGTGCAGGCAGCGCCCTTGCAGACCCTGGTGAGTGGCGGAACCATCCTGGCGACTGTGCCGCTGGTAGTGGACGCTGACAAGCTGCCCATCAACCGGCTGGCAGCCAGTGGCAAGGCCCCGGGCTCGGCCCAGAGCCGAGGTGAGAAGCGTACGGCCCACAATGCCATTGAGAAACGCTACCGCTCTTCCATCAATGACAAGATCGTCGAGCTCAAGGACCTGGTGGTGGGCACAGAGGCCAAGCTGAATAAATCCGCTGTCTTGCGCAAGGCCATCGACTACATCCGCTTCCTTCAGCAGGGCAACCAGAGACTCAAGCAGGAGAACCTGAGTCTGCGCACAGCTGCCCACAAAAGCAAATCTCTGAAGGACCTGGTGTCAGCCTGCGGCAGTGGAGGCCACACAGACGTGCCCATGGAGGGCGAGAAGCCAGAGGTGGTGGACACCCTGAGCCCGCCACCCTCAGACGCCGGCTCGCCCTTCCAGCGCAGCCCACTGTCCCTTGGCAGCAGGGGCAGTAGCAGTGGTGGCAGTGGCAGTGACTCGGAGCCTGACAGCCCAGTCTTTGAGGACAGCCAGGTGAAGCCAGAGCAGCTGCCGCCCCCCCACAGCCGGGGCATGCTGGACCGCTCCCGCCTGGCCCTGTGTGTGCTTGTCTTCCTCTGTCTCTCCTGCAACCCCTTGGCCTCCCTGCTGGGCAGCCGGGGTCCCGCTGGCCCCTCCGATGCCACCAGCGTCTACCATGGTCCTGGGCGCAGCATGCTGGGTGCTGAGGGCAGAGATGGCATTGGCTGGGCCCCGTGGCTGCTGCCCCCACTGCTCTGGCTGATGAACGGGCTGCTGGTGCTGTTCTCCTTGACACTTCTCTTTGTCTACGGAGAGCCGGTCACGCGGCCCCACTCAGGCCCCGCCGTGCACTTCTGGAGGCATCGCAAGCAGGCTGACCTGGACCTGGCCCGGGGGGACTTTGCCCAGGCCTCCCAGCAGCTGTGGCTGGCCCTGCGGGCCCTGGGCCGGCCCCTGCCCACCTCCCACCTGGACCTGGCCTGCAGCCTGCTCTGGAGCCTGATCCGCCACCTGCTGCAGCATCTCTGGGTGGGCCGCTGGCTGGCAGGCCGGGCGGGGGGCCTGCGGAGGGATGGTGCCCTGCAGGTGGACGCCCGCACCAGTGCCCGCGATGCGGCCCTTGTCTACCACAAGCTGCACCAGCTGCACACCATGGGGAAGTACTCGGGCGGGCACCTGGCTGCCGCCAACCTGGCACTGAGTGCCCTGAACCTGGCCGAGTGCGCGGGGGAGGCCATGTCCGTGGCCACTCTGGCTGAGATCTATGTGGCCACCGCGCTCAGGGTCAAGACCAGTCTCCCCCGGGCCTTGCATTTTCTGACGCGCTTCTTCCTGAGTAGTGCCCGCCAGGCCTCCCTGGCACAGAGCGGCTCAGTTCCTCTTGCCATGCAGTGGCTCTGCCACCCTATGGGCCACCGTTTCTTCGTGGATGGGGACTGGGCCGTGTGCAGCGCTCCGCGGGACAGCCTGTACAGCATGGCCGGGAGCCCAGTGGACCCCCTGGCCCACGTGACTCAGCTCTTCCGTGAACATCTCTTGGAGCGAGCGCTGCATTGCCTGGCCCAGCCCAGCCCCGGCCCTGGGTCAGCCGATGGGGACAGGGAATTCTCCGATGCCCTCGGGTACCTGCAGCTGCTGAACAGCTGTTCTGACGTGGCCGGGGCTCCTGCCTGCAGCTTTTCCATCGGCTCCAGCATGGCTGCCACTGCCGGCACAGACCCGGTGGCCAAGTGGTGGGCCTCGCTGACGGCTGTGGTGACTCACTGGCTCCGGCGGGATGAGGCGGCGGCCGAGCGGCTGTATCCACTGGTGGAGCACCTGCCCCGCGCCCTGCAGGAGTCCGAGAGACCCCTGCCCAGGGCGGCTCTGCACACCTTCAAGGCTGCCCGGGCCCTGCTGGGCCGTGGGAAGGCAGAGTCTGGCCCGGCCAGCCTGGCCGTGTGTGAGAAAGCCAGTGGGTACCTTCAGGACAGCCTGGCCGCTACGCCAGCCGGCAGCTCCATTGACAAGGTCATGCAGCTGCTCCTGTGTGACCTGCTCCTTGTGGCGCGCACCAGCCTGTGGCAGCGGCAGAAGCCGCCGGCACCCTCCCAGGCCTCACCGGGCCCGGGCAGTGGGGCCCAGGCCTCTGCCCTCGAGCTCCGTGGCTTCCAGAGGGACCTGAGTGGCCTGAGGCGTCTGGCGCAGAGTTTCCGGCCTGCCATGCGGAGGGTGTTCCTACATGAAGCCACTGCCCGGCTGATGGCAGGGGCCAGCCCGGCGCGGACACACCAGCTCCTGGACCGCAGCCTGAGGAGGAGGGCCGGCCCCTGCGGCAAAGGAGGCACGGCGGCGGAGCTGGAGCCGCGGCCCACGAGGCGGGAGCACGCGGAGGCGTTGCTCCTGGCTTCCTGCTACCTGCCGCCCGGCTTCCTGTCGGCGCCTGGGCAGCGAGTGGGCATGCTGGCCGAGGCGGCACGCACGCTCGAGAAGCTCGGTGACCGCCGGCTGCTGCATGACTGCCAGCAGATGCTCATGCGCCTGGGCGGCGGGACCACCGTAACCTCCAGCTAG

Related Sequences

bmy_19337T0 Protein

Length: 1167 aa      View alignments
>bmy_19337T0
AAWEPSCRGTFRGRRASLRPGRDAKSRSGGGGPGGPPGGGDCAMDEPPFSEAALEQALAEPSELDAALLTDIEDMLQLINNQDSDFPGLFEPPFAGGGAGGTDPASPDASSPGSLSPPPSTMSSPLEGFLGGTKATTPPLSPPQPAPTPLKMYPSVPAFSAGPAIKEEPAPLTTLQPLPGALLPQRLPAPAPPQFSSAPVLGYPSPPGGFSTGVPPVSLHNQVQSAAPQQLLTATATPTVAPGTTTVTSQVQQVPVLLQPHFIKADSLLLTTVKTDVGAPMKAAGISSLAPGMAVQAAPLQTLVSGGTILATVPLVVDADKLPINRLAASGKAPGSAQSRGEKRTAHNAIEKRYRSSINDKIVELKDLVVGTEAKLNKSAVLRKAIDYIRFLQQGNQRLKQENLSLRTAAHKSKSLKDLVSACGSGGHTDVPMEGEKPEVVDTLSPPPSDAGSPFQRSPLSLGSRGSSSGGSGSDSEPDSPVFEDSQVKPEQLPPPHSRGMLDRSRLALCVLVFLCLSCNPLASLLGSRGPAGPSDATSVYHGPGRSMLGAEGRDGIGWAPWLLPPLLWLMNGLLVLFSLTLLFVYGEPVTRPHSGPAVHFWRHRKQADLDLARGDFAQASQQLWLALRALGRPLPTSHLDLACSLLWSLIRHLLQHLWVGRWLAGRAGGLRRDGALQVDARTSARDAALVYHKLHQLHTMGKYSGGHLAAANLALSALNLAECAGEAMSVATLAEIYVATALRVKTSLPRALHFLTRFFLSSARQASLAQSGSVPLAMQWLCHPMGHRFFVDGDWAVCSAPRDSLYSMAGSPVDPLAHVTQLFREHLLERALHCLAQPSPGPGSADGDREFSDALGYLQLLNSCSDVAGAPACSFSIGSSMAATAGTDPVAKWWASLTAVVTHWLRRDEAAAERLYPLVEHLPRALQESERPLPRAALHTFKAARALLGRGKAESGPASLAVCEKASGYLQDSLAATPAGSSIDKVMQLLLCDLLLVARTSLWQRQKPPAPSQASPGPGSGAQASALELRGFQRDLSGLRRLAQSFRPAMRRVFLHEATARLMAGASPARTHQLLDRSLRRRAGPCGKGGTAAELEPRPTRREHAEALLLASCYLPPGFLSAPGQRVGMLAEAARTLEKLGDRRLLHDCQQMLMRLGGGTTVTSS*