Part of scaffold_2023 (SequenceType object (1))

For more information consult the page for scaffold_2023 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LRRC48ENSTTRG00000008103 (Bottlenosed dolphin)

Gene Details

leucine rich repeat containing 48

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000007674, Bottlenosed dolphin)

Protein Percentage 74.72%
cDNA percentage 80.88%
Ka/Ks Ratio 0.31995 (Ka = 0.1021, Ks = 0.3192)

LRRC48ENSBTAG00000008798 (Cow)

Gene Details

leucine-rich repeat-containing protein 48

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000011591, Cow)

Protein Percentage 83.02%
cDNA percentage 85.66%
Ka/Ks Ratio 0.08525 (Ka = 0.0976, Ks = 1.145)

LRRC48 (Minke Whale)

Gene Details

leucine rich repeat containing 48

External Links

Gene match (Identifier: BACU005269, Minke Whale)

Protein Percentage 88.3%
cDNA percentage 90.82%
Ka/Ks Ratio 0.20225 (Ka = 0.0739, Ks = 0.3655)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence SequenceType object (2)

Length: 798 bp    Location:290855..305433   Strand:+
>bmy_19339
ATGAACCGGCTGTGCGACATGGAGCCCAGGGTGATGGATGATGAGATGCTCAAGCTGGCCGTTGGGCAGCAGGGCCCGCGAGACGAGGCCGGGCAGCTGGCCAAGCAGGAGGGCATCCTCTTCAAGGACGTCCTGTCCCTGCAGCTGGACTTCCACAACATCCTCCGCATCGACAGCCTCTGGCAGTTTGAGAACCTACGGAAGCTGCAGCTGGACAACAACATCATCGAGAAGATCGAGGGCCTGGAGAACCTCACACGCCTGGTCTGGCTGGACCTGTCCTTCAACAACATTGAGGCCATCGAGGGGCTGGACACGCTGGTGAACCTGGAGGACCTGAGCCTGTTCAACAACCGGATCTCCAAGATCGACTCGCTGGACGCGCTGGTCAAGCTGCAGGTGCTGTCGCTGGGCAACAACCAGATCGGCAACATGATGAACGTCATCTACCTGCGGCGGTTCAAGGACCTGCGGACGCTCAGCCTTTCAGGGAACCCGGTCGCCGAGGCCGAGGACTACAGGACGTGCATCTGTGCCTACCTCCCCGACCTGGTGTACCTGGACTTCCGGCGCATCGACGACCAAATGAAAGAGCTGGCGGAGATGAAGCACCAGTACAGCATGGACGAGCTGAAGCACCGGGAGAGCCTGATGCAGGCCCGGCTGGAGGGTGAGCAGGCCCGGCGGGAGGAGCTGGCGGAGCACGAGGTACGAGGCCACCGGTGGGAGGACCCGCTCCCCACCCCTCCGCCCCGCCCGCCCGAGGATGCTGCCGCCGGTCATGGGCCGGTGCCGTGA

Related Sequences

bmy_19339T0 SequenceType object (3)

Length: 266 aa      View alignments
>bmy_19339T0
MNRLCDMEPRVMDDEMLKLAVGQQGPRDEAGQLAKQEGILFKDVLSLQLDFHNILRIDSLWQFENLRKLQLDNNIIEKIEGLENLTRLVWLDLSFNNIEAIEGLDTLVNLEDLSLFNNRISKIDSLDALVKLQVLSLGNNQIGNMMNVIYLRRFKDLRTLSLSGNPVAEAEDYRTCICAYLPDLVYLDFRRIDDQMKELAEMKHQYSMDELKHRESLMQARLEGEQARREELAEHEVRGHRWEDPLPTPPPRPPEDAAAGHGPVP*