Part of scaffold_2014 (Scaffold)

For more information consult the page for scaffold_2014 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TAF4B ENSTTRG00000014587 (Bottlenosed dolphin)

Gene Details

TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013833, Bottlenosed dolphin)

Protein Percentage 87.26%
cDNA percentage 88.35%
Ka/Ks Ratio 0.54256 (Ka = 0.0396, Ks = 0.073)

TAF4B ENSBTAG00000004257 (Cow)

Gene Details

transcription initiation factor TFIID subunit 4B

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000005578, Cow)

Protein Percentage 87.67%
cDNA percentage 89.15%
Ka/Ks Ratio 0.36614 (Ka = 0.0796, Ks = 0.2175)

TAF4B  (Minke Whale)

Gene Details

TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa

External Links

Gene match (Identifier: BACU017849, Minke Whale)

Protein Percentage 96.57%
cDNA percentage 96.3%
Ka/Ks Ratio 0.37303 (Ka = 0.0255, Ks = 0.0682)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1560 bp    Location:78081..44645   Strand:-
>bmy_19367
ATGCCCGCGGGCCTCACAGAACCGGCCGGCGCCGCTCCCCCCGCCGGTGTGGGCGCCTCCGGGACCGTGACCATGGCCCCCGCCGCGGCTCTGCCCGTCCGGGTGGAGAGCACTCCGGTGGCCTTGGGCGCCGTGACTAAGGCTCCTGTCAGTGTGTGCGTGGAGTCCACGGCGTCCCAGCCGCTGCGGTCCCCCGTGGGGACCCTGGTGACTAAAGTGGCTCCTGTCAGTGCTCTTCCTAAACTCAGCAGCGGCCCTCGTCTGCCAGCTCCTCAGATTGTCGCTGTGAAAGCCCCCAACACCACAACAATCCAGTTGCCTGCTAATTTGCAGCTTCCCCCAGTACCGATTAATTTTAAATTACTAATGCTGATGACTCTGTACTATCTCCCCCTCCCCCCCAAGAATTCTGGTTCACAGTTAATCAAGAAGGTGGCAGTGGCACCTGTTAAACAACTGGCACAAATAGGAACTACTGTGGTAACCACTGTTCCGAAGCCTTCCCCAGTGCAATCTGTGGCTGTGCCAACCAGTGTTGTCACAGTGACCCCTGCAAAGCCGTTGAATACTGTGGCTACCCTGAAGCCTTCAAGTTTGGGAGCGCCACCCACCCCCTCAAGTGAGCCCAGTCTCACAGCAGAGAACTCAGCCACTGCTCAGACTAATCTTTCTCCGACGATGCTAGAAAATGTGAAGAAATGTAAGAACTTCCTCGCAATGTTAATAAAACTAGCGTGTAGTGGATCACAGTCCCCGGAGATGGGGCAGAATGTGAAGAAGTTGGTGGAACAACTTTTGGATGCAAAAATTGAAGCAGAAGAATTTACTAGACAACTGTATGTTGAACTCAAGTCTTCACCTCAGCCTCACCTAGTTCCTTTCCTTAAGAAGAGTGTGATTGCCTTACGACAACTGATGCCTAACTCCCAGAGCTTTATTCAGCAGTGTGTGCAGCAGACTTCTAGCGAGGTGTTCATTGCTACCTGTACCACAGCAGTAATGCCTTCTCCTGTGGTGACAACAGCAGTTTCCTCAATCCAGCCCGAAAAGCCCATCATTGGTTCTGAAGCAGCAACATCTGGAACTGTGTCAGTGCAAACTCTGAATCCACTTGCTCCAGGGGGAGCAAAAACTGGAGTTGTGACACTTCATTCTGTGGGTCCAGCTGCTGTGCCAGGAGGAACAACAGCTGGAACTGTTGTGCTTCAGACTCCAAAACCGCTAGTGACATCTCTGCAGAACACAGTGACGGCAGTCTCACTTCAGCCTGAGAAGCCAGTTGTCTCTGGGACAGCAGTGACACTGGCCCTCCCCTCGGTAGTCCAGCAGCCTTCAGGAGGCCTTGCAAAACAAGTGACCACACTTTCCCATTCCTCAGCATTGACCATCCAGAAATCTGGACAGAAGAAGGTGACAGTGAGCACTGCAGTACCTACCAGTCAGTTTCCTCAAGCTTCCATTCTAAAGCAAATTACCCTGCCAGGAAATAAAGTTCTGTCACTTCAATCATCTATTCAGAAAAACAAAATAAAAGAGAATGGAACAACATCCTTCAGGTAA

Related Sequences

bmy_19367T0 Protein

Length: 520 aa      View alignments
>bmy_19367T0
MPAGLTEPAGAAPPAGVGASGTVTMAPAAALPVRVESTPVALGAVTKAPVSVCVESTASQPLRSPVGTLVTKVAPVSALPKLSSGPRLPAPQIVAVKAPNTTTIQLPANLQLPPVPINFKLLMLMTLYYLPLPPKNSGSQLIKKVAVAPVKQLAQIGTTVVTTVPKPSPVQSVAVPTSVVTVTPAKPLNTVATLKPSSLGAPPTPSSEPSLTAENSATAQTNLSPTMLENVKKCKNFLAMLIKLACSGSQSPEMGQNVKKLVEQLLDAKIEAEEFTRQLYVELKSSPQPHLVPFLKKSVIALRQLMPNSQSFIQQCVQQTSSEVFIATCTTAVMPSPVVTTAVSSIQPEKPIIGSEAATSGTVSVQTLNPLAPGGAKTGVVTLHSVGPAAVPGGTTAGTVVLQTPKPLVTSLQNTVTAVSLQPEKPVVSGTAVTLALPSVVQQPSGGLAKQVTTLSHSSALTIQKSGQKKVTVSTAVPTSQFPQASILKQITLPGNKVLSLQSSIQKNKIKENGTTSFR*