Part of scaffold_2056 (Scaffold)

For more information consult the page for scaffold_2056 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SEC13 ENSTTRG00000004395 (Bottlenosed dolphin)

Gene Details

SEC13 homolog (S. cerevisiae)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004137, Bottlenosed dolphin)

Protein Percentage 54.9%
cDNA percentage 62.88%
Ka/Ks Ratio 0.56752 (Ka = 0.2858, Ks = 0.5036)

SEC13 ENSBTAG00000017825 (Cow)

Gene Details

Protein SEC13 homolog

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000023702, Cow)

Protein Percentage 79.05%
cDNA percentage 83.33%
Ka/Ks Ratio 0.17376 (Ka = 0.1133, Ks = 0.6519)

SEC13  (Minke Whale)

Gene Details

SEC13 homolog (S. cerevisiae)

External Links

Gene match (Identifier: BACU018889, Minke Whale)

Protein Percentage 59.51%
cDNA percentage 70.72%
Ka/Ks Ratio 0.78087 (Ka = 0.3665, Ks = 0.4694)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 846 bp    Location:362959..329697   Strand:-
>bmy_19436
ATGCCAGCATCCTCAAGATCCCTGAGGTCAGAGCAGCAACTGCTTTTACTCTTCCTGGTTCCAGGTGATACAGATGAATTGTGTGGCCCCATTAATACCAATGGGAACGAAACAAATTTACTCCGTCCTGATGGATTAAGTCTGTACTTCACTGGCTTGAGGAAGGTCCTGTTCTACCAGAAGTCAGAGAAAAGATCAGCAGCTCTTATAAATGGAGAGCTACCCCCCAAAGCCCCTATTCGCACGGAATTACAAAAGCAGCATGATGCCCAGGTGGACTACTGTGGCACCCGCCCGGCAACCCGCTCAGCAGACAGGTCCGTCAAGATCTGCGACGTGCTCAACGGAGGACAGACCCTCATCGCCGACCTCAGGGGTCATGAGGGTCCTGTGTGGCCAGTGGCCTGGGCCCACCCCACGTACGGCAATGTCCCGGCATCCTGCTCCTACGACCGGAAAGTCATTATCTGGAAAGAGGAAAATGGCACCTGGGAGAAGACGCATGAGCACACAGTAAACTCTGTGTGCTGGGCCCCCCGTGACTACGGCCTGATCCTAGCCTGTGGGAGCTGGGATGGGGCCATTTCTCTGCTGACTTACACCAGGTTGGGCCAGTGGGAAGTGAAGAAGACCAACCATGCTCACACTGTTGGCTGCAATGCCGTCAGCTGGGCCCCTGCTGTCGGACCTGGAAGCCTCACAGACCAGCCACCTGGGCAGAAGCCCAACTACACCAAGAAGTTTGCATTAGCTGGCTGTGACAACCTCATCAAACTGTGGGAGGAGGWGGAGGACGGCCAGCGGGAGGAAGGGCAGAAGTTGGACGCGCACAGCGAGTGGGTTTGA

Related Sequences

bmy_19436T0 Protein

Length: 282 aa      View alignments
>bmy_19436T0
MPASSRSLRSEQQLLLLFLVPGDTDELCGPINTNGNETNLLRPDGLSLYFTGLRKVLFYQKSEKRSAALINGELPPKAPIRTELQKQHDAQVDYCGTRPATRSADRSVKICDVLNGGQTLIADLRGHEGPVWPVAWAHPTYGNVPASCSYDRKVIIWKEENGTWEKTHEHTVNSVCWAPRDYGLILACGSWDGAISLLTYTRLGQWEVKKTNHAHTVGCNAVSWAPAVGPGSLTDQPPGQKPNYTKKFALAGCDNLIKLWEEXEDGQREEGQKLDAHSEWV*