Part of scaffold_2083 (Scaffold)

For more information consult the page for scaffold_2083 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HAPLN1 ENSTTRG00000006234 (Bottlenosed dolphin)

Gene Details

hyaluronan and proteoglycan link protein 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000005885, Bottlenosed dolphin)

Protein Percentage 92.44%
cDNA percentage 93.51%
Ka/Ks Ratio 0.57558 (Ka = 0.0571, Ks = 0.0992)

HAPLN1 ENSBTAG00000012411 (Cow)

Gene Details

Hyaluronan and proteoglycan link protein 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000016468, Cow)

Protein Percentage 92.15%
cDNA percentage 91.47%
Ka/Ks Ratio 0.29718 (Ka = 0.0573, Ks = 0.1929)

HAPLN1  (Minke Whale)

Gene Details

hyaluronan and proteoglycan link protein 1

External Links

Gene match (Identifier: BACU015436, Minke Whale)

Protein Percentage 93.9%
cDNA percentage 94.48%
Ka/Ks Ratio 0.60913 (Ka = 0.0491, Ks = 0.0806)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1035 bp    Location:147601..135738   Strand:-
>bmy_19474
ATGGCAAGGCAGAAGCAAAGCAAGAGGATTCTGTTAACCAAGATACAGCAGAAAGCAGGGGCAGCGGGGGCAGAAAATGGTCCCCGTCTACTCGTGGAAGCAGAACAAGCCAAGGTGTTCTCACACAGAGGTGGCAATGTTACACTGCCATGTAAATTTTACCGAGACCCTACAGCACTTGGCTCAGGAACCCACAAAATCCGAATTAAGTGGACCAAGCTAACTTCAGATTACCTCAAGGAAGTGGATGTTTTTGTTTCCATGGGATACCACAAGAAAACCTATGGAGGCTACCAGGGTAGAGTGTTTCTGAAAGGAGGCAGTGATAATGATGCTTCTCTGGTGATCACAGACCTTACCCTGGAGGATTATGGGAGATATAAGTGYGAGGTGATTGAAGGATTAGAAGATGATACCGCTGTGGTAGCATTAGATTTACAAGGTGTGGTATTTCCTTATTTTCCACGACTGGGGCGCTACAATCTCAATTTTCACGAGGCACAGCAGGCTTGTCTGGACCAGGATGCTGCGATCGCCTCGTTTGACCAGCTGTACGATGCCTGGAGGGGTGGGCTGGACTGGTGCAATGCTGGCTGGCTCAGTGATGGGTCTGTACAGTATCCCATCACAAAACCCAGAGAACCCTGCGGAGGCCAGAACACAGTGCCCGGAGTCAGGAACTACGGGTTTTGGGACAAAGATAAAAGCAGATACGATGTCTTCTGTTTTACATCCAACTTCAATGGCCGATTCTACTACCTGATCCACCCCACCAAGCTGACCTACGACGAAGCGGTGCAGGCTTGTCTCAACGATGGTGCTCAGATTGCTAAAGTGGGCCAGATATTCGCTGCCTGGAAACTTCTGGGATATGACCGTTGCGATGCAGGCTGGTTGGCGGATGGCAGYGTCCGCTACCCCATCTCTAGGCCAAGAAGGCGCTGCAGTCCTACTGAGGCTGCGGTGCGCTTCGTGGGTTTCCCAGATAAAAAGCATAAGCTGTATGGTGTCTACTGCTTCAGAGCATACAACTGA

Related Sequences

bmy_19474T0 Protein

Length: 345 aa      View alignments
>bmy_19474T0
MARQKQSKRILLTKIQQKAGAAGAENGPRLLVEAEQAKVFSHRGGNVTLPCKFYRDPTALGSGTHKIRIKWTKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKGGSDNDASLVITDLTLEDYGRYKCEVIEGLEDDTAVVALDLQGVVFPYFPRLGRYNLNFHEAQQACLDQDAAIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPCGGQNTVPGVRNYGFWDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKLLGYDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFVGFPDKKHKLYGVYCFRAYN*