Part of scaffold_2174 (Scaffold)

For more information consult the page for scaffold_2174 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

MSH6 ENSTTRG00000008063 (Bottlenosed dolphin)

Gene Details

mutS homolog 6 (E. coli)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000007640, Bottlenosed dolphin)

Protein Percentage 94.36%
cDNA percentage 95.13%
Ka/Ks Ratio 0.36234 (Ka = 0.0371, Ks = 0.1023)

BT.98842 ENSBTAG00000001424 (Cow)

Gene Details

DNA mismatch repair protein Msh6

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000001867, Cow)

Protein Percentage 93.04%
cDNA percentage 92.52%
Ka/Ks Ratio 0.20823 (Ka = 0.0434, Ks = 0.2083)

MSH6  (Minke Whale)

Gene Details

mutS homolog 6

External Links

Gene match (Identifier: BACU019397, Minke Whale)

Protein Percentage 95.96%
cDNA percentage 96.43%
Ka/Ks Ratio 0.39784 (Ka = 0.0283, Ks = 0.071)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 4017 bp    Location:186248..203624   Strand:+
>bmy_19511
ATGCCGGCAAAGGCCCGGTCGGGGCCTCAAGTGAAAGCGCCGCCGCCGCTGCCACCGGGGCCTCCCCTTCCCCAGGCGGGGATGCGGCCTGGAGCGAGGCAGGGCCTGGGCCGGGGCCCCTGGCGGGCTCCACTTCGCGGGCCGAGGCGAGGAACCTCAACGGAGGGCTGCGGAAGACGGCAGCCCCTGCGTTCTTGTGACTTCTCACCAGGTGATTTGGTTTGGGCCAAGATGGAGGGTTACCCTTGGTGGCCTTGCCTGGTTTACAACCACCCTTTTGATGGAACATTCATCCGTGAGAAAGGAAAGTCTGCCCGAGTTCATGTACAGTTTTTTGATGACAGCCCAACAAGGGGCTGGGTTAGCAGAAGGCTATTAAAGCCATATACAGGTTCAAAGTCAAAGGAAGCCCAGAAAGGAGGTCATTTCTACAGTTCAAAGCCTGAAATACTCAGAGCAATGCAACGTGCAGATGAAGCCTTGAATAAAGACAAGATTAAGAGGCTTGAACTGGCAGTGTGTGATGAGCCCTCAGAACCAGAGGAGGAAGAAGAGACGGAGGCAGGTGCCACTTACGCATCAGATAAGAGTGAAGAAGAAAATGAAATTGAGAGTGAAGAGGAAGTGAGGCCAAAGGTGCAAGGATCTAGGCGAAGTAGCCGCCAGATAAAAAAACGAAGGGTCATATCAGACTCTGAGAGTGACATTGGTGGCTCTGATGTGGAATTTAAGCCAGATGCTAAGGAGGAAGGAAGCAGTGATGAAATAAGCAGTGGAGTAGGGGATAGTGACAGTGAAGGCCTGGACAGCCCTGTCAAAGTTGCTCCAAAGAGGAAGAGAATGGTAACTGGAAATGGCTCCCTCAAAAGGAAAAGTTCAAGGAAGGAAATGCCCTCAGCCACCAAACGAGCAACTGGCATTTCATCAGAAACCAAGAATACTTTGAGTGCTTTCTCTGCCCCTCAAAATTCTGAATCCCAAGCCCACATTAGTGGAGGATGTGATGACAGTAGTCGCCCCACCACCTGGTATCATGAAACTTTAGAGTGGCTTAAGGAGGAGAAGAGAAGAGATACGCACAGGAGGCGACCTGATCACCCTGATTTTGATGCATCCACACTCTATGTGCCTGAGGATTTCCTTAATTCCTGTACTCCTGGGATGAGGAAGTGGTGGCAGATTAAGTCTCAGAACTTTGATCTTGTCATATTTTATAAGGTGGGGAAGTTTTATGAGCTGTACCACATGGATGCTCTTATTGGAGTCAGTGAACTAGGGCTGGTATTCATGAAAGGCAACTGGGCCCATTCTGGTTTCCCTGAAATTGCATTTGGCCGATATTCAGATTCCCTGGTCCAGAAGGGCTATAAAGTAGCACGGGTAGAACAGACCGAGACCCCGGAAATGATGGAGGCACGATGCCGAAAGATGGCACATATATCTAAGTATGATAGAGTGGTGAGGAGGGAGATCTGTAGGGTCATTACCAAGGGTACACAGACCTACAGTGTGCTGGAAGGTGACCCCTCAGAGAACTACAGTAAGTACCTTCTTAGCCTCAAAGAAAAAGAAGATGATTCTTCTGGCCACGCTCGAGTGTATGGAGTATGTTTTGTTGATACCTCGCTAGGGAAGTTCTTCATAGGTCAGTTTTCAGATGATCGCCATTGTTCCAGGTTTAGGACTTTAGTGGCACACTATCCTCCAGTACAAGTCTTGTTTGAGAAAGGAAATCTCTCAGTGGAAACTAAGATGATTCTCAAGGGTTCATTATCCTCTTCTCTTCAGGAAGGTCTGATACCAGGTTCCCAGTTTTGGGATGCAGCCAAAACTTTGAGAACTCTCCTTGAAGAAGGATATTTTACAGACAAGTTAAATGAGGACAGTGGGATGATGTTACCCCAGGTGCTTAAAGGTATGACCTCAGAGTCTGATTCTGTTGGGTTGACACCGGGAGAGAAGAGTGAATTGGCCCTCTCTGCTCTTGGTGGTTGTGTCTTCTACCTCAAAAAATGCCTTATTGATCAGGAGCTTTTATCAATGGCTAATTTTGAAGAATATATTCCCTTGGATTCTGACACGGTCCGTGCTACAAGACCTGGTGCTGTCTTTGCTAAAGCCAATCAACGAATGGTGCTAGATGCTGTGACATTAAACAACTTGGAGATTTTTCTGAATGGAACAAATGGTTCTACTGAAGGGACCCTGTTAGAGAAGATTGATACTTGCCATACTCCCTTCGGTAAGCGGCTCCTAAAGCAATGGCTTTGTGCCCCACTCTGTAACCCTTATGTTATCAGTGATCGTCTAGATGCCATAGAAGACCTAATGGTTGTGCCTGACAAAATCTCCGAGGTTGTAGACCTTCTAAAGAAGCTCCCAGACCTTGAGAGGCTACTGAGTAAAATTCATAATGTTGGCTCTCCCCTGAAGAGCCAGAACCACCCAGATAGCAGGGCTATAATGTATGAAGAAACCACATACAGCAAAAAAAAGATTATTGATTTTCTTTCTGCTCTGGAAGGATTCAAAGTACTATGTAAAATTATAGGGGTTATGGAAGAAGTCATCGATGACTTTAAGTCTAAAATCCTTAAGCAGGTCCTTACTCTGCAGACAAAAAAACCTGAAGGCCGCTTTCCTGATTTGACTTTAGAACTAAACCGATGGGATACAGCCTTTGACCATGAAAAGGCTCGAAAGACTGGACTGATTACTCCCAAAGCAGGATTTGACTCTGATTATGATCAGGCTCTTGCTGACATAAGAGAAAATGAACAGAGCCTCCTGGAATACTTGGAGAAACAGCGTAGTCGAATTGGCTGTAGGACCATAGTCTACTGGGGAATTGGTAGGAATCGTTACCAGTTGGAAATTCCCGAGAATTTCATCACCCGTAATTTGCCAGAAGAATATGAGTTGAAATCTACCAAGAAGGGCTGTAAACGATACTGGACCAAAACAATTGAGAAAAAGTTGGCTAATCTGATAAATGCTGAAGAACGGAGAGATGTATCATTAAAGGACTGCATGCGGCGACTGTTCTATAACTTTGATAAAAATTACAAGGACTGGCAGGCTGCTGTGGAGTGCATCGCAGTGCTGGATGTCTTATTGTGCCTGGCTAACTACAGTCGAGGGGGTGATGGTCCTATGTGTCGTCCAGTAATTCTGTTGCCAGAAGAAGATACTCCTCCCTTTCTAGACCTTAAAGGATCACGCCACCCCTGCATTACGAAGACTTTTTTTGGTGATGACTTTATTCCAAATGACATTCTAATAGGCTGTGAGGAAGAGGAAGAAAATGGCAAAGCTTACTGTGTGCTTGTTACTGGACCGAATATGGGGGGCAAGTCTACGCTCATGAGACAGGCTGGCCTACTAGTTGTAATGGCCCAGATGGGTTGTTATGTACCAGCTGAAGTGTGTAGGCTCACACCAATCGATAGAGTGTTTACTAGACTTGGTGCCTCAGACAGAATAATGTCAGGTGAAAGTACATTTTTTGTTGAATTGAGTGAAACTGCCAGTATACTTACACATGCAACAGCACATTCTCTGGTGCTTGTGGATGAATTAGGAAGAGGTACTGCAACATTTGATGGGACAGCAATAGCAAATGCAGTTGTTAAAGAACTTGCTGAGAATATAAAGTGTCGTACATTGTTTTCTACCCACTACCATTCATTAGTTGAAGACTATTCTCAAAATGTTGCAGTGCGCCTAGGACACATGGCATGCATGGTAGAAAATGAATGTGAAGATCCCAGCCAGGAGACTATTACCTTCCTGTACAAATTCATTAAAGGAGCCTGTCCTAAAAGCTATGGCTTTAATGCAGCAAGGCTTGCTAATCTTCCAGAGGAGGTTATTCAAAAGGGACATAGAAAAGCAAGAGAATTTGAGAAGATGACTCAGTCACTGCGATTATTTCGGGAAGTTTGTCTGGCTAGTGAAAGGTCGACTGTAGATGCTGAAGCTGTCCATAAGTTGCTGACTTTGATTGAGGAATTATAG

Related Sequences

bmy_19511T0 Protein

Length: 1339 aa      View alignments
>bmy_19511T0
MPAKARSGPQVKAPPPLPPGPPLPQAGMRPGARQGLGRGPWRAPLRGPRRGTSTEGCGRRQPLRSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTFIREKGKSARVHVQFFDDSPTRGWVSRRLLKPYTGSKSKEAQKGGHFYSSKPEILRAMQRADEALNKDKIKRLELAVCDEPSEPEEEEETEAGATYASDKSEEENEIESEEEVRPKVQGSRRSSRQIKKRRVISDSESDIGGSDVEFKPDAKEEGSSDEISSGVGDSDSEGLDSPVKVAPKRKRMVTGNGSLKRKSSRKEMPSATKRATGISSETKNTLSAFSAPQNSESQAHISGGCDDSSRPTTWYHETLEWLKEEKRRDTHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVIFYKVGKFYELYHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRVITKGTQTYSVLEGDPSENYSKYLLSLKEKEDDSSGHARVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSVETKMILKGSLSSSLQEGLIPGSQFWDAAKTLRTLLEEGYFTDKLNEDSGMMLPQVLKGMTSESDSVGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVRATRPGAVFAKANQRMVLDAVTLNNLEIFLNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCAPLCNPYVISDRLDAIEDLMVVPDKISEVVDLLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVLCKIIGVMEEVIDDFKSKILKQVLTLQTKKPEGRFPDLTLELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRSRIGCRTIVYWGIGRNRYQLEIPENFITRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQAAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEEDTPPFLDLKGSRHPCITKTFFGDDFIPNDILIGCEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLLVVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMTQSLRLFREVCLASERSTVDAEAVHKLLTLIEEL*