Sequence detailsbmy_19517 (Coding sequence)

Part of scaffold_2102 (SequenceType object (1))

For more information consult the page for scaffold_2102 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SLC12A1ENSTTRG00000015407 (Bottlenosed dolphin)

Gene Details

solute carrier family 12 (sodium/potassium/chloride transporters), member 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000014610, Bottlenosed dolphin)

Protein Percentage 87.65%
cDNA percentage 88.07%
Ka/Ks Ratio 0.11714 (Ka = 0.0048, Ks = 0.0406)

SLC12A1ENSBTAG00000010145 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000043868, Cow)

Protein Percentage 91.68%
cDNA percentage 92.19%
Ka/Ks Ratio 0.32038 (Ka = 0.0562, Ks = 0.1753)

SLC12A1 (Minke Whale)

Gene Details

solute carrier family 12 (sodium/potassium/chloride transporter), member 1

External Links

Gene match (Identifier: BACU003225, Minke Whale)

Protein Percentage 82.34%
cDNA percentage 86.25%
Ka/Ks Ratio 0.50319 (Ka = 0.1291, Ks = 0.2565)

Additional orthologs identified in other species via the OPTIC pipeline.

SLC12A1 (Human)   Slc12a1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1950 bp    Location:179639..233769   Strand:+
Raw sequence 
>bmy_19517
ATGCTGGCCATCTTCATCACCACTGTCGCCTACATAGGAGTTGCTATTTGTGTAGGGGCCTGTGTGGTCCGAGATGCCACCGGGAGCATGAATGACACCGTCATTTCTGGGATGAACTGCAACGGTTCAGCAGCCTGTGGGTTAGGCTACGACTTCTCAAGATGTCGACATGAACCATGTCAGTATGGGCTGATGAACAATTTCCAGGTCATGAGCATGGTGTCAGGGTTTGGCCCCCTCATCACTGCTGGCATCTTTTCTGCAACACTCTCCTCGGCCCTGGCCTCCCTCGTCAGCGCACCCAAAGTTTTCCAGGCTCTGTGCAAGGACAACATCTACAAAGCCCTGCAGTTCTTTGCAAAGGGATATGGGAAAAACAATGAGCCCCTGAGAGGATACTTTCTCACTTTTGTTATAGCCATGGCGTTCATTCTTATTGCGGAACTGAATACCATTGCTCCCATCATCTCCAACTTTTTCCTGGCCTCATACGCACTTATTAATTTCTCCTGCTTTCATGCCTCTTATGCCAAATCTCCAGTGGGTGGTGTAATTCACTTTATTTTGGATGGAGACCTGCATACGGTATTTACAACATGTGGGTATCTCTTTTTGGAGCTATTTTGTGCTGTGCAGTCATGTTTGTCATCAACTGATGTGAACTGGGGCTCCTCCACGCAGGCTCTTTCCTACGTGAGTGCTTTAGACAATGCTCTGGAACTAACTACAGTGGAAGACCATGTGAAAAATTTCAGGCCCCAGTGCATTGTCTTAACAGGGGGACCCATGACAAGACCTGCTCTCTTGGATATAACTCACGCCTTTACCAAGAACAGTGGCCTTTGCATCTGCTGTGAAGTCTTTGTGGGACCGCGCAAGCTGTGTGTTAAAGAGATGAACAGTGGCATGGCAAAAAAGCAGGCCTGGCTTATAAAAAACAAAATCAAGGCTTTTTATGCAGCAGTGGCGGCAGATTGTTTCAGGGATGGTGTCCGAAGTCTCCTTCAGGCCTCAGGCTTAGGAAGAATGAAACCAAACACTCTGGTGATTGGATATAAAAAAAACTGGAGGAAGGCTCCCCTGACAGAGATTGAAAACTACGTGGGACTCATACAGGTAGAGAACGTGCTGAGAGATGAATTAGAGAAATTAGAACAGGAGAGACTGGCTTTGGAAGCCACTATCAAAGATAATGAATGCGAAGAAGAAAGTGGAGGCCTCAGAGGCTTGTTTAAAAAAGCTGGCAAGCTGAACATTACTAAGCCAACTCCCAAGAAAGACAGCAGCATTAACACAATCCAGTCCATGCATGTGGGGGAGATCAACCAGAAACTGGTGGAAGCAAGCACCCAATTTAAAAAGAAGCAAGGAAAAGGCACAATTGATGTTTGGTGGTTGTTTGATGATGGAGGGTTAACACTCCTTATCCCCTATATCTTGACTCTCAGAAAAAAATGGAAAGACTGTAAATTAAGAATCTATGTCGGAGGGAAGATCAATCGCATTGAAGAAGAAAAAATTACAATGGCTTCCCTCCTGAGCAAATTTAGGATAAAATTTGCAGACATCCATGTCATTGGTGACATCAACATTAAGCCAAACAAAGAAAGCTGGAAATTCTTTGAAGAAATGATTGAACCATATCGTCTCCATGAAAGCTGCAAAGATTTAACAACTGCTGAGAAATTAAAGAGAGAAACTCCGTGGAAAATTACAGATGCAGAGCTGGAAGCAGTCAAGGAAAAGAGTTACCGCCAAGTTCGACTGAACGAACTCTTACAGGAGCACTCAAGAGCTGCTAATCTCATAGTCCTGAGCCTTCCAGTGGCAAGAAAAGGATCTATATCAGATTGGTTGTACATGGCTTGGTTGGAAATCCTCACGAAGAACCTCCCTCCTGTCTTACTAGTTAGAGGAAATCACAAAAATGTCCTGACATTTTATTCTTAA

Related Sequences

bmy_19517T0 SequenceType object (3)

Length: 650 aa      View alignments
>bmy_19517T0
MLAIFITTVAYIGVAICVGACVVRDATGSMNDTVISGMNCNGSAACGLGYDFSRCRHEPCQYGLMNNFQVMSMVSGFGPLITAGIFSATLSSALASLVSAPKVFQALCKDNIYKALQFFAKGYGKNNEPLRGYFLTFVIAMAFILIAELNTIAPIISNFFLASYALINFSCFHASYAKSPVGGVIHFILDGDLHTVFTTCGYLFLELFCAVQSCLSSTDVNWGSSTQALSYVSALDNALELTTVEDHVKNFRPQCIVLTGGPMTRPALLDITHAFTKNSGLCICCEVFVGPRKLCVKEMNSGMAKKQAWLIKNKIKAFYAAVAADCFRDGVRSLLQASGLGRMKPNTLVIGYKKNWRKAPLTEIENYVGLIQVENVLRDELEKLEQERLALEATIKDNECEEESGGLRGLFKKAGKLNITKPTPKKDSSINTIQSMHVGEINQKLVEASTQFKKKQGKGTIDVWWLFDDGGLTLLIPYILTLRKKWKDCKLRIYVGGKINRIEEEKITMASLLSKFRIKFADIHVIGDINIKPNKESWKFFEEMIEPYRLHESCKDLTTAEKLKRETPWKITDAELEAVKEKSYRQVRLNELLQEHSRAANLIVLSLPVARKGSISDWLYMAWLEILTKNLPPVLLVRGNHKNVLTFYS*