Part of scaffold_2138 (Scaffold)

For more information consult the page for scaffold_2138 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PDP1 ENSTTRG00000012470 (Bottlenosed dolphin)

Gene Details

pyruvate dehyrogenase phosphatase catalytic subunit 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011826, Bottlenosed dolphin)

Protein Percentage 97.15%
cDNA percentage 97.27%
Ka/Ks Ratio 0.34958 (Ka = 0.0193, Ks = 0.0553)

PDP1 ENSBTAG00000000199 (Cow)

Gene Details

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000043214, Cow)

Protein Percentage 94.19%
cDNA percentage 90.43%
Ka/Ks Ratio 0.12371 (Ka = 0.04, Ks = 0.3236)

PDP1  (Minke Whale)

Gene Details

pyruvate dehyrogenase phosphatase catalytic subunit 1

External Links

Gene match (Identifier: BACU000488, Minke Whale)

Protein Percentage 99.44%
cDNA percentage 99.13%
Ka/Ks Ratio 0.08896 (Ka = 0.0025, Ks = 0.0283)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1842 bp    Location:272765..291333   Strand:+
>bmy_19555
ATGGAGAGTGACATCGATTTATACATACCTCAAATGAAAATGGAATTTCCGGATGCAGAACAGAGTAAGAATCAAGAGCTAAAGAGCTCTGGAGTCGGTGCAGTAATTGCATTCTCTAATTTCTTCTGTGAGTTTATTGATGAAGTTGAATCACTTCTTGGCACAAACTCTGTTGAGCACATCAGAATCCCAGTCAGAAGTTCCAGCCTGCCGCTGTTCTCTGATGCCATGCCAGCACCAACTCAACTGTTTTTCCCTCTGATCCGTAACTGTGAACTGAGCAGAATCTATGGCACTGCGTGTTACTGCCACCACAAACATCTCTGCTGCTCACCCCCTTACATTCCTCAGAGTCGCCTGAGATATACACCCCATCCGACATACGCTACCTTTTATAGGCCAAAGGAGAGCTGGTGGCAGTACACCCAAGGAAGGAGATATGCTTCCACACCACAGAAATTTTACCTTACACCTCCACAAGTCAACAGCATCCTGAAAGCTAATGAATACAGTTTCAAAGTGCCAGAATTTGATGGCAAAAATGTCAGTTCTGTCCTTGGATTTGACAGCAATCAGCTGCCTGCGAATGCACCCATTGAGGACCGGAGAAGTGCAGCAACCTGCTTGCAGACCAGAGGGATGCTTTTGGGGGTTTTCGATGGCCATGCAGGCTGTGCTTGCTCCCAGGCGGTCAGTGAAAGACTCTTTTATTATATTGCTGTTTCTCTGTTACCCCAGGAGACTTTGCTAGAGATCGAAAATGCGGTGGAGAGCGGTCGAGCACTGCTCCCCATTCTCCAGTGGCACAAGCATCCCAATGACTATTTCAGTAAGGAGGCGTCCAAGTTATATTTCAACAGCTTGAGGACTTACTGGCAAGAGCTTATAGACCTTAACACTGGGGAGTCGACTGAAATTGATGTTAAGGAGGCTTTGATTAATGCATTCAAGAGGCTTGATAACGACATCTCCTTGGAGGCTCAAGTCGGTGATCCCAATTCTTTCCTCAACTACCTGGTGCTTCGAGTGGCATTTTCTGGGGCCACAGCTTGTGTGGCCCATGTGGATGGTGTTGACCTTCATGTGGCCAATACTGGTGATAGCAGAGCCATGCTGGGTGTGCAGGAAGAGGACGGCTCTTGGTCGGCAGTCACTCTGTCTAATGACCACAATGCTCAGAATGAAAGAGAAGTGGAACGCCTGAAATTGGAGCACCCAAAGAATGAGGCCAAGAGTGTGGTGAAACAGGATCGGCTACTTGGCTTACTGATGCCTTTTAGGGCTTTTGGAGACGTAAAGTTCAAATGGAGCATTGACCTTCAAAAGAGAGTGATAGAATCTGGCCCAGACCAGCTGAATGACAACGAATATACCAAGTTTATCCCTCCTAATTATTACACACCTCCTTATCTCACTGCTGAGCCGGAAGTAACTTACCACCGATTAAGGCCACAGGATAAATTTCTGGTATTGGCGACTGATGGATTGTGGGAGACAATGCATAGGCAGGATGTGGTTAGGATTGTGGGCGAGTACCTAACAGGCATGCATCACCAACAGCCAATAGCTGTTGGTGGCTATAAGGTGACTCTGGGACAGATGCATGGCCTTTTAACAGAAAGGAGAGCCAAGATGTCATCGGTATTTGAGGATCAGAATGCAGCAACCCATCTAATTCGCCATGCTGTGGGCAACAACGAGTTTGGGGCTGTTGATCACGAGCGCCTCTCCAAAATGCTTAGTCTTCCTGAAGAGCTTGCTAGGATGTACAGGGATGACATTACAATCATTGTAGTTCAGTTCAATTCTCATGTCGTAGGGGCATATCAAAACCAGGAATAG

Related Sequences

bmy_19555T0 Protein

Length: 614 aa      View alignments
>bmy_19555T0
MESDIDLYIPQMKMEFPDAEQSKNQELKSSGVGAVIAFSNFFCEFIDEVESLLGTNSVEHIRIPVRSSSLPLFSDAMPAPTQLFFPLIRNCELSRIYGTACYCHHKHLCCSPPYIPQSRLRYTPHPTYATFYRPKESWWQYTQGRRYASTPQKFYLTPPQVNSILKANEYSFKVPEFDGKNVSSVLGFDSNQLPANAPIEDRRSAATCLQTRGMLLGVFDGHAGCACSQAVSERLFYYIAVSLLPQETLLEIENAVESGRALLPILQWHKHPNDYFSKEASKLYFNSLRTYWQELIDLNTGESTEIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQNEREVERLKLEHPKNEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYYTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHHQQPIAVGGYKVTLGQMHGLLTERRAKMSSVFEDQNAATHLIRHAVGNNEFGAVDHERLSKMLSLPEELARMYRDDITIIVVQFNSHVVGAYQNQE*