Part of scaffold_2152 (Scaffold)

For more information consult the page for scaffold_2152 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

XPC ENSTTRG00000011196 (Bottlenosed dolphin)

Gene Details

xeroderma pigmentosum, complementation group C

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000010617, Bottlenosed dolphin)

Protein Percentage 92.44%
cDNA percentage 95.38%
Ka/Ks Ratio 0.57514 (Ka = 0.0404, Ks = 0.0702)

XPC ENSBTAG00000007362 (Cow)

Gene Details

DNA repair protein complementing XP-C cells

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000009683, Cow)

Protein Percentage 83.14%
cDNA percentage 85.61%
Ka/Ks Ratio 0.1933 (Ka = 0.0917, Ks = 0.4745)

XPC  (Minke Whale)

Gene Details

xeroderma pigmentosum, complementation group C

External Links

Gene match (Identifier: BACU009998, Minke Whale)

Protein Percentage 95.93%
cDNA percentage 97.06%
Ka/Ks Ratio 0.44383 (Ka = 0.023, Ks = 0.0517)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2745 bp    Location:68156..31093   Strand:-
>bmy_19601
ATGGCCGCGGGCAGGGAGCCGCGGGGACATGTCTTCGAAGATGAGAAACCTCTAAAGAAGAGCCTTCTCTCAAAAGTTTCACGAGGAAAGAGGAAGAGGGGCTACGGTGATTCTGGGGGCCCAGCAGATGGTCCAGCAAGAAAGAAAGCGGCCAAAGTGACTGTTAAATCCGAAAACCCTCAGGTTATTAAGGATGAAGCCCTCAGTGATGGGGAAGATTTCAGGGACTTCCCGAGTGCCCCCAAGAAGGTGCACCGTCCAGAGAAAGAGGCTGCTGTGGACAAAGGTGGGGGTGAAGGGGACGACGAGGAAGAGAGTGAGGAGGACTGGGAAGAGGTAGAAGAAGTTAGTGAGCCCATGCCGGGTGACGTGGGGGAAAGCTCAGCCTTGTCTACATCTGCTCTGCCCGTGAAGCCTGTGGAGATAGAAATTGAAACACCGGAGCAGTTGAAGGCAAGAGAAAGAAGTGAAAAGATAAAAACGGAGCTTGAGACATATCTTCGGAGGATGGTGAAACGTTTCAATAAGGAAGTCCGTGAGGACACACACAAGGTTCACCTTCTGTGTCTGCTGGCAAATGGCTTCTATCGAAATAGCATCTGCAACCAGCCAGATCTGCGTGCCATCGGCCTCTCCATYGTCCCAACTCGCTTTACCAAAGTGCCACCTCAAGACGTGGACGTCAGCTACCTGTCAAACCTGGTGAAATGGTTCATTGGAACATTTACAGTTAATGCAGACCTTTCAACCAATGAGCAGGATGGCCTGCAGACGACGCTGGAGAGAAGGTTTGCTATTTACTCTGCGAGAGACAATGAAGAGTTGGTCCACATATTTTTACTGATTCTCCGGGCCCTGCATCTCCCTACCCGACTCGTACTGTCTCTACAGCCAATTCCTCTGAAGTTATCAGCAGCGAAGGGAAAGAAACCTTCCAAGGAGAGATCCACAGAGGGTCCTGGAGGCTCCTCAGAAACTTCCAGCCAAGTTCCTGGAAAACCAAGCAAACCAGAGACCAGCAGAGGAAGCAGACGAGAGGACACGTCTTCTGAGGGCGCTGGCAGTGCACGTGCCAAAGGGAAGGGGAGCAAGGCGGCTGCCATCAGGAAGAAGCGGAGAGAGCCCTCCTCCAGCAGGGAAGAAGAGGGCAAGGCCGGGGGGCAGACGGAGGGGACCCAGAGGCGTTCGCGGGGCCGGGAGCGGTGGGCGGCCGCCAGGGTGTCTTACAAAGAAGAGAGCGGAAGTGACGAGGCCGGCAGCGGCTCTGACTTTGAGCTCTCCAGCTCGGACAGCCATCGCCCATCCGACGAGGATTCTGAGCCAGGCCTTTCAAGGCAGAGGAGGGCCACCGCCCCTCAGAGGATGAAGGTGGGGTCCAAGAGGGAGTCCAGGTCCCAGCGTGGAAGCCACCCTCAGCCCCCTGGCTTTCCAGAAGCGTCTGTAAGCGCTTCCGGCAGTAAGCGTAAGAGAGGCAAGCGTACGATGCCCGTGGATGGTGAGGAGGCAGACGGCCGGAGAGCAGCTGGTGTGGACCAGTGGCTGGAGGTGTTCTCCGAGCGGGAGGAGAAGTGGCTGTGCGTGGACTGTGTGCACGGAGTCGTGGGCCAGCCCCTGACCTGCTACCAGCACGCCACCAAGCCTGTGACCTACATCGTGGGCATCGACGGCGACGGCTGGGTGCGCGACGTCACACAGAGGTACGACCCTGCCTGGATGACGGCGACCCGAAAGTGCCGGGTTGACGCCGCGTGGTGGGCCGAGGCCCTGCGACCCTACCGGAGCCCGCTGGTGGCGAGGGAGCAGAGGGAGGACCAGGAGTTACCTGGGCAAGTTCGGGGGTCGCCGCCAACCTCCCTCCCTCCCTCTCCGAGCACCACGCCCAACGTYGTCTCTCGGCCTCTGCAGTTTCAGGCGAGGCACCTGGACCAGCCTCTGCCCACCGTCATAGGCACGTAYAAGAACCACCCTCTGTATGCCCTCAAGAGGCACCTCCTCAAGTACGAGGCCATCTACCCTGAGACGGCTGCCATCCTCGGGTACTGCCGCGGAGAGGCTGTCTACTCCAGGGACTGCGTGCACACCCTGCACTCCAGGGACACGTGGCTGAAACAGGCCCGAGTGGTGAGGCTTGGAGAAGTGCCCTACAAGGTAACGGCCGCGGGACTGCGGGCTGCCGCGCACGTCCCCCGGAATGAATTTGGGAACGTGTACCTCTTCCTGCCCGGCATGATGCCTGTCGGCTGCGTCCAGCTGAACCTGCCCAACCTGCACCGCGTGGCCCGAAAGCTGAACATTGACTGTGCCCAGGCTGTTACGGGCTTCGATTTCCACAAAGGCTACTCCCATCCCATAACCAACGGCTACATAGTCTGTGAGGAATATAAAGATGTGCTCCTGACCGCCTGGGAGAACGAGCAGGCGCTCATTGAGAAGAAGGAGAAGGAGAAAAGGGAGAAGCGTGCTCTGGGGAACTGGAAGCTGCTGGTCAAAGGGCTGCTCATCCGGGAGCGGCTGAGGCTTCGCTATGGGGCTCAGAGCGAGGAAGCCGCTCCCCACGCAGACGCAGGAGGAGGACTCTCTTCAGACGAGGAGGAGGGGACCAGCTCTCCCGCGGAAGCGGCCAGGATCCTGGCGGCCTCCTGGCCCCAAAACCGAGAGGTAGAGGAGAAGCGGAAGTGCCCCCGGAAGAGCAGGAGGGAGGAGAAGGAGGCAGCTTCCCACCTGTTCCCGTTTGAGAAGCTGTGA

Related Sequences

bmy_19601T0 Protein

Length: 915 aa      View alignments
>bmy_19601T0
MAAGREPRGHVFEDEKPLKKSLLSKVSRGKRKRGYGDSGGPADGPARKKAAKVTVKSENPQVIKDEALSDGEDFRDFPSAPKKVHRPEKEAAVDKGGGEGDDEEESEEDWEEVEEVSEPMPGDVGESSALSTSALPVKPVEIEIETPEQLKARERSEKIKTELETYLRRMVKRFNKEVREDTHKVHLLCLLANGFYRNSICNQPDLRAIGLSIVPTRFTKVPPQDVDVSYLSNLVKWFIGTFTVNADLSTNEQDGLQTTLERRFAIYSARDNEELVHIFLLILRALHLPTRLVLSLQPIPLKLSAAKGKKPSKERSTEGPGGSSETSSQVPGKPSKPETSRGSRREDTSSEGAGSARAKGKGSKAAAIRKKRREPSSSREEEGKAGGQTEGTQRRSRGRERWAAARVSYKEESGSDEAGSGSDFELSSSDSHRPSDEDSEPGLSRQRRATAPQRMKVGSKRESRSQRGSHPQPPGFPEASVSASGSKRKRGKRTMPVDGEEADGRRAAGVDQWLEVFSEREEKWLCVDCVHGVVGQPLTCYQHATKPVTYIVGIDGDGWVRDVTQRYDPAWMTATRKCRVDAAWWAEALRPYRSPLVAREQREDQELPGQVRGSPPTSLPPSPSTTPNVVSRPLQFQARHLDQPLPTVIGTYKNHPLYALKRHLLKYEAIYPETAAILGYCRGEAVYSRDCVHTLHSRDTWLKQARVVRLGEVPYKVTAAGLRAAAHVPRNEFGNVYLFLPGMMPVGCVQLNLPNLHRVARKLNIDCAQAVTGFDFHKGYSHPITNGYIVCEEYKDVLLTAWENEQALIEKKEKEKREKRALGNWKLLVKGLLIRERLRLRYGAQSEEAAPHADAGGGLSSDEEEGTSSPAEAARILAASWPQNREVEEKRKCPRKSRREEKEAASHLFPFEKL*