Sequence details bmy_19670 (Coding sequence)

Part of scaffold_2160 (Scaffold)

For more information consult the page for scaffold_2160 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TOPORS ENSTTRG00000012164 (Bottlenosed dolphin)

Gene Details

topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011527, Bottlenosed dolphin)

Protein Percentage 98.66%
cDNA percentage 98.53%
Ka/Ks Ratio 0.15419 (Ka = 0.0062, Ks = 0.0404)

TOPORS ENSBTAG00000005905 (Cow)

Gene Details

E3 ubiquitin-protein ligase Topors

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000045917, Cow)

Protein Percentage 90.49%
cDNA percentage 91.54%
Ka/Ks Ratio 0.20605 (Ka = 0.05, Ks = 0.2427)

Additional orthologs identified in other species via the OPTIC pipeline.

TOPORS (Human)   Topors (Mouse)  

Genome Location

Sequence Coding sequence

Length: 3246 bp    Location:136040..145074   Strand:+
Raw sequence 
>bmy_19670
AGGCGGGTGCTGTGTTTTGACTTGCTGGGGGTCGCGGAGTGGGTTTCGCTTTCTGCCACCGCTTTCTGCCACCGCCCCCAAGCAGCCATTGGTGATGAGCGCTTTACGTCGCAGGGGTCGCAGCAGCCGCCGGGGTCTCCGCTGTCTCGCGAGGAGGGTGAAGCGCCCCTGCCTACTCCCGCTCCTGAGGGCCGGCGGAGAAGTCGCCGGGTTCGCCTTCGCGGGTCCTGCCGTCACCGACCCAGCTTTCTGGGCCGTCGGGAGCTTGCCACGAGCTCCCCAGCCGGGCCTGCGCCGGTATCCTCCGAGATAATGGCATCAGCCGCTAAGGAATTTAAAATGGACAACTTTTCACCTAAAGCTGGCACTAGCAAATTGCAACAGACAGTACCAGCTGATGCATCTCCTGATTCTAAGTGTCCTATATGCTTGGATAGGTTTGATAATGTGTCTTACTTAGATCGCTGTTTACATAAGTTCTGTTTTCGCTGTGTACAGGAGTGGTCAAAAAACAAAGCTGAATGTCCACTATGTAAACAGCCCTTTGATTCTATTTTCCATTCTGTGAGGGCAGAAGACGACTTCAAGGAGTATGTACTAAGGCCTTCGTACAATGGTTCTTTTGTTACCCCTGATGTTCGACGATTCCGCTATCGTACAACTATGACAAGGGAACGAAGTGCTTCTATTTATTCACCTAACAGTACCATGAATAGAAGAACAACAACTCCACCAGATAGTGGAGTAATATTTGAAGGGTTAGGCATTTCAGCAAGACCTAGAGATGGTGAAATTCCTCCATTTATGAGACAGATTGCAATAAGGAGGCCAGCTACTGCAGATGAAAGATCTTTGCGGAAAATTCAAGAACAGGATATTATTAATTTTAGGCGAACTCTCTATCGTGCTGGTGCTCGAGTTAGAAATATTGAAGATGGTGGCCGCTATAGGGATATTTCAGCTGAATTTTTCCGTAGAAATCCGGCTTGCCTTCACAGATTAGTCCCCTGGTTAAAACGTGAACTCACAGTTCTCTTTGGAGCTCATGGATCATTAGTGAATATTGTCCAGCATATCATCATGAGTAATGTTACTCGCTATGACTTGGAGAGTCAGGCATTTGTGTCTGATTTAAGGCCATTTTTACTTAATCGGACTGAGCATTTTATACACGAATTTATCAGTTTTGCCCGATCTCCATTTAACATGGCAGCCTTTGACCAGCATGCAAATTATGATTGTCCTGCTCCTTCATATGAAGAAGGTAGCCATTCTGATTCTTCGGTCATAACAATATCTCCCGATGAAGCAGAGACCCAAGAGCTGGATGTTAATGTAGCTACTGTTAGTCAGGCACCATGGGATGATGAAACTCCAGGGCCATCTTATTCAAGCTCAGAGCAGGTACATGCTGCCATGTCTTCCCTTTTAAATACTTCCGACAGTTCAGATGAAGAACTTGTAACAGGAAGAGCCACATCTCAGATGCAAGGAGTACAAACCAATGACAACATAAATAACGACAGTGATTCTTCTTCAGATAATTGTGTCATTGTTGGGTTTGTTAAACCACTAGCTGAGAGGACCCCAGAACTTGTTGAACTGTCCTCTGATTCTGAGGAGTTAGGTTCCTACGAGAAAATGGAGACCGTGAAGGCACAAGAACAAGAGCAGTCTTACAGTTCTGGTGATAGTGATGTTAGTAGATGTTCATCTCCACACTCTATCCTTGGAAAGGATGAACAAATAAATAAAGGTCATTGTGATTCTGGTACAAGAATCAAATCAAAGAAGGAAGAGAAACGGTCTGTATCATTGTCCTCTCCCAGAGACCTGAGCTCATCCATCAGAGGAGACAGGGTATATTCCCCATATACCCGCAGACACAGAAGGAGGGGAAGATCCAGAAGTTCAGATTCATGTTCCCAGGGTAGGAGTGGGCATGATCAGAAGAATCGTAGGAAGCATCATGGGAAGAAAAGAATGAAAAGCAAACGATCCAGAAGCAGGGAGAGTAGCAGACCTAGAGGTAGAAGAGACAAAAAGAGATCAAGAACTAGAGATAGCAGTTGGTCAAGAAGAAGCCAAACTCTGTCTCTAAGTAGTGAAAGCACAAGCAGATCAAGATCTCGTAGCAGTGATCGTGGTAAAAGAAGATCACGGAGCAGAAATCGAGATCGTTACTATTTAAGAAATAATTATGGAAGCAGATATAAGTGGGAGTATACTTACTATAGTAGAAACAAGGACAGGGATGGCTACGAATCATCTTACAGGAGGAGGACTCTGTCCAGAGCTCACTATTCCAGACAATCTTCAAGTCCAGAATTTAGAATTCAGTCTTTTTCTGAAAGAACAAATGCTAGGAAAAAAAATAATCACGGTGAAAGAAAATATTACTACTATGAAAGGCACAGATCAAGGAGCCTATCTAGTACTAGATCAAAGACTGCATCTACAGGGCCTGACCGGGTGAGAAATGAAAAGCCTGGCGGGAAACGAAAATACAAAACACGGCATTTGGAGGGTTCTAACGATGTGGCCCAACCATCTCGGGAATTTGCTTCTAAAGTAAAGGAAGGTCATTACTCAAAATCTTCATCAAAATTGGATGGAAGCTACAAAAATGAGAGTGACAGCTTTTCAGATAGCCGATCATCAGACAGAGAGACAAAGCACAAGAGAAGAAAAAGGACCCGGAGCCTAAGTGTAGAGATAGTTTATGAAGGGAAAGCTACCGATACAACTAGACACCATAAAAAGAAAAAGAAAAAACATAAGAGGAAGCATAAGAAACACCATGGCGATAATGCTTCACGTTCCCCAGTTGTGATTACCATTGACAGTGACAGTGATAAGGATTCTGAAGTAAAGGAGGATACAGAACGTGACCTTAGTGGTCCTCAAGACCCTCTACAAAACGAATTTTTGGTTCCTTCCTTGGACCCATTTGAAACTAAAGATGTAGTTACAATAGAAGATGAATTTGGTGTCCTGGGCAAGGAGTGTGATATTACCACACTTAATAACAACTTGAATAATGCCAACAAAACTGTAGATAATATTTCACCCCAGGCAGCTTCAATTGAACAGACTCTTGATGTAAGAGAAGAGAACACCTTTGCCTCTGATTTGGAGAGCCAGCCCAGTAATGTCTCTTATCAGATTGAGTCATCAAGGCGATTGCCATCTCCACGGATATCATTAATGTCAGTGTCTCTTGGTAGAGACCATGATATGTCTTAA

Related Sequences

bmy_19670T0 Protein

Length: 1082 aa      View alignments
>bmy_19670T0
RRVLCFDLLGVAEWVSLSATAFCHRPQAAIGDERFTSQGSQQPPGSPLSREEGEAPLPTPAPEGRRRSRRVRLRGSCRHRPSFLGRRELATSSPAGPAPVSSEIMASAAKEFKMDNFSPKAGTSKLQQTVPADASPDSKCPICLDRFDNVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPFDSIFHSVRAEDDFKEYVLRPSYNGSFVTPDVRRFRYRTTMTRERSASIYSPNSTMNRRTTTPPDSGVIFEGLGISARPRDGEIPPFMRQIAIRRPATADERSLRKIQEQDIINFRRTLYRAGARVRNIEDGGRYRDISAEFFRRNPACLHRLVPWLKRELTVLFGAHGSLVNIVQHIIMSNVTRYDLESQAFVSDLRPFLLNRTEHFIHEFISFARSPFNMAAFDQHANYDCPAPSYEEGSHSDSSVITISPDEAETQELDVNVATVSQAPWDDETPGPSYSSSEQVHAAMSSLLNTSDSSDEELVTGRATSQMQGVQTNDNINNDSDSSSDNCVIVGFVKPLAERTPELVELSSDSEELGSYEKMETVKAQEQEQSYSSGDSDVSRCSSPHSILGKDEQINKGHCDSGTRIKSKKEEKRSVSLSSPRDLSSSIRGDRVYSPYTRRHRRRGRSRSSDSCSQGRSGHDQKNRRKHHGKKRMKSKRSRSRESSRPRGRRDKKRSRTRDSSWSRRSQTLSLSSESTSRSRSRSSDRGKRRSRSRNRDRYYLRNNYGSRYKWEYTYYSRNKDRDGYESSYRRRTLSRAHYSRQSSSPEFRIQSFSERTNARKKNNHGERKYYYYERHRSRSLSSTRSKTASTGPDRVRNEKPGGKRKYKTRHLEGSNDVAQPSREFASKVKEGHYSKSSSKLDGSYKNESDSFSDSRSSDRETKHKRRKRTRSLSVEIVYEGKATDTTRHHKKKKKKHKRKHKKHHGDNASRSPVVITIDSDSDKDSEVKEDTERDLSGPQDPLQNEFLVPSLDPFETKDVVTIEDEFGVLGKECDITTLNNNLNNANKTVDNISPQAASIEQTLDVREENTFASDLESQPSNVSYQIESSRRLPSPRISLMSVSLGRDHDMS*