Part of scaffold_2176 (Scaffold)

For more information consult the page for scaffold_2176 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TRMT12 ENSBTAG00000020398 (Cow)

Gene Details

tRNA wybutosine-synthesizing protein 2 homolog

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000027186, Cow)

Protein Percentage 90.41%
cDNA percentage 92.09%
Ka/Ks Ratio 0.30209 (Ka = 0.0517, Ks = 0.1711)

TRMT12  (Minke Whale)

Gene Details

tRNA methyltransferase 12 homolog (S. cerevisiae)

External Links

Gene match (Identifier: BACU013229, Minke Whale)

Protein Percentage 98.18%
cDNA percentage 98.86%
Ka/Ks Ratio 0.87025 (Ka = 0.0104, Ks = 0.012)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1320 bp    Location:183478..184797   Strand:+
>bmy_19701
ATGGACAGGGCAGGCGGGAAGTCCGCGGCTGTTGTCGCAGTTGTGACTGAACCTCGGTTTACCCAGCGATACAGGGAATATCTCGAGAAGCAGAAACTCCTGGAGAGACAGCACCGTGTGGAAAAGATGCCGGATGGCACCGTGGCGCTACCGGTGCTGGGAGAGGCCCTCCATGAGCAGCACCTGCGGGAGCTGAGGAATCGTGTGGCTCCAGGCAGCACCTGTGTGCTAACGCAGCTCCTGAATCCTGTTCCTTCAAAGAAGGCCCAGGCTTGTTCACCTACCCAAAGGCTGTGTCTTGAGGTGAGACGCTGGGTRGAGGGCCGCGGAGTGACGTGGTCAGCTCAGCTGGAGGCTGATCTGCCCCGATCTTGGCAGCGACATGGTGACCTCTTGTTGCTGAGTGAGGACTGTTTCCAAGCCAAGCAATGGAGAAATCTGGAACCAGAACTCTGGGAGACGGTTGCCTCGGCCCTTGGCGTCCAGCGTTTGGCCAAACGAGGGCGGGTGTCACCGGATGGCACTCGAACTCCAGCAGTGAGTCTGCTGCTGGGCGACCATGGCTGGGTAGAGCATATGGATAATGGGATCCGATATAAGTTTGACGTGACCCAGTGCATGTTCTCCTTCGGAAACATCACTGAGAAGCTTCGTGTGGCATCGCTGCCCTGTGCTGGAGAAGTGCTGGTGGATCTCTATGCAGGGATTGGTTATTTCACCTTGCCTTTCCTAGTTCATGCTGGTGCTGCCTTCGTCCATGCCTGCGAGTGGAACCCCCATGCTGTAGTTGCTCTGAGAAATAACCTTGAGCTCAATGGAGTAGCTGATCGATGCCAGATACACTTTGGGGATAACAGAAAACTGAAGCTCTCAAACATTGCGGACAGGGTGAACCTGGGGCTGATTCCCAGCTCTGAAGAAGGCTGGCCCATTGCCTGCCAAACGCTAAGACAGGATGCTGGAGGCATTTTGCATATTCACCAAAATGTGGAATCTTTCCCAGGGAAGACTCTCCAGCCTCCTGGAAGCAGTGAAATGGAAAAGGAGTATTGGTCTTCTCCTCAGCAAATGATCACCAACCAGTTGAAAAATGGAGCTGCCAGAGATTCTAGGAGAAAAATGCTGTCAGCTGCCACCAAGCCAGAGTGGCAAAGGTGGGCGGAAGCTGCAGAAACTCGAATTGCCACTCTTCTTCAACAGGTGCACGGGAAACCGTGGAAGACACAAATCCTGCACATCCAACCAGTGAAATCCTATGCTCCCCACGTGGATCACATAGTCCTGGATCTGGAATGCCGCCCCTGTCCTCTAGTTGGCTAG

Related Sequences

bmy_19701T0 Protein

Length: 440 aa      View alignments
>bmy_19701T0
MDRAGGKSAAVVAVVTEPRFTQRYREYLEKQKLLERQHRVEKMPDGTVALPVLGEALHEQHLRELRNRVAPGSTCVLTQLLNPVPSKKAQACSPTQRLCLEVRRWVEGRGVTWSAQLEADLPRSWQRHGDLLLLSEDCFQAKQWRNLEPELWETVASALGVQRLAKRGRVSPDGTRTPAVSLLLGDHGWVEHMDNGIRYKFDVTQCMFSFGNITEKLRVASLPCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNNLELNGVADRCQIHFGDNRKLKLSNIADRVNLGLIPSSEEGWPIACQTLRQDAGGILHIHQNVESFPGKTLQPPGSSEMEKEYWSSPQQMITNQLKNGAARDSRRKMLSAATKPEWQRWAEAAETRIATLLQQVHGKPWKTQILHIQPVKSYAPHVDHIVLDLECRPCPLVG*