Part of scaffold_2181 (Scaffold)

For more information consult the page for scaffold_2181 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LAMP2 ENSTTRG00000002952 (Bottlenosed dolphin)

Gene Details

lysosomal-associated membrane protein 2

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000002760, Bottlenosed dolphin)

Protein Percentage 78.61%
cDNA percentage 81.67%
Ka/Ks Ratio 0.44719 (Ka = 0.0798, Ks = 0.1785)

BT.104573 ENSBTAG00000007399 (Cow)

Gene Details

lysosome-associated membrane glycoprotein 2 isoform 1 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000054262, Cow)

Protein Percentage 86.87%
cDNA percentage 90.32%
Ka/Ks Ratio 0.38794 (Ka = 0.0761, Ks = 0.1963)

LAMP2  (Minke Whale)

Gene Details

lysosomal-associated membrane protein 2

External Links

Gene match (Identifier: BACU007520, Minke Whale)

Protein Percentage 90.41%
cDNA percentage 93.06%
Ka/Ks Ratio 0.45938 (Ka = 0.0584, Ks = 0.1271)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1212 bp    Location:228641..204533   Strand:-
>bmy_19717
TCCAATTTAAAAATTTTACTCTTTTCAATAAATCTAGGAGCTGTCTCGTCTTATGCATTGGAACTTAATTTGACAGATTCAGAAAACGCCACTTGCCTTTATGCAAAATGGCAGATGAATTTCACAATACACTATGAGACCACAGACAAACATAATAAAACTGTAACCATTTCAGACCTTGGTGCTGCAAAGTACAGTGGAAGCTCTTGTGGGGATGACCAGAATGGTTCCAAAATTGCAGTGCAGTTTGGATCTGGTTTTTCCTGGATTGTGAATTTTACAGAAGAGGAGACGTCTTCTTATTCAATCGACAGCATCTCATTTTCCTACGACACTAATGATAGCACAACATTTCCTGATGCGAAAGAAAAAGGAGTTTTTACTGTTTCTGACCGTTTGGCATTCAAAGTTCCATTGAATGACATCTTTAGATGCAATAGTTTATTAACCTTAGGAAAGAATGATGTTGTCCAGCACTATTGGGATGTTCACGTACAAGCTTTTGTCCAAAATGGCACAGTGAGCACAAAAGAGTTTTTGTGTGATAAAGACAAAACTTTAACCACAGTGGTGCCCATCGTTCCCACCACTGTGCCATCTCCTACTACAACACCCTCTCCAAAGGAAAAGCCAGAGGTTGGATCCTATTCAGTTGTAAATAGCAATGGGACATGTCTTCTGGCTACCATGGGGCTGCAGCTGAACGTTACTCATGATAAGGTTGCTTCGGTTATTAACATCAATCCCAACACAACCAACTTCACTGGCAGCTGCCATCCTCAAACTGCTCTACTTAGGCTGAGCAGCAGCAGCATCAAGTATCTGGACTTTGTCTTTGCTGTGAAAAATGAAAACCGATTCTATCTAAAGGAGGTGAATGTCAGCATGTATTTGGTTAACGGCTCTGTTTTTAGCATTGCAAATAACAATCTCAGCTAYTGGGATGCCCCCCTGGGAAGTTCTTATATGTGCAACAAAGAGCAGACTGTTTCAGTGTCTGGAGCATTTCAGATAAATACCTTTGATCTAAGGGTTCAGCCTTTCAATGTGATGGAAGGAAAGTATTCTACAGCTCAAGACTGCAGTGCAGATGACGACAACTTCCTTGTGCCCATAGCAGTGGGAGCAGCCTTGGCAGGAGTGCTTATTCTAGTGTTGCTGGCTTACTTTATTGGTCTCAAGCGCCATCATGCTGGATATGAGCAATTTTAG

Related Sequences

bmy_19717T0 Protein

Length: 404 aa      View alignments
>bmy_19717T0
SNLKILLFSINLGAVSSYALELNLTDSENATCLYAKWQMNFTIHYETTDKHNKTVTISDLGAAKYSGSSCGDDQNGSKIAVQFGSGFSWIVNFTEEETSSYSIDSISFSYDTNDSTTFPDAKEKGVFTVSDRLAFKVPLNDIFRCNSLLTLGKNDVVQHYWDVHVQAFVQNGTVSTKEFLCDKDKTLTTVVPIVPTTVPSPTTTPSPKEKPEVGSYSVVNSNGTCLLATMGLQLNVTHDKVASVININPNTTNFTGSCHPQTALLRLSSSSIKYLDFVFAVKNENRFYLKEVNVSMYLVNGSVFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVMEGKYSTAQDCSADDDNFLVPIAVGAALAGVLILVLLAYFIGLKRHHAGYEQF*