Sequence detailsbmy_19784 (Coding sequence)

Part of scaffold_2184 (SequenceType object (1))

For more information consult the page for scaffold_2184 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PTCH2ENSTTRG00000003395 (Bottlenosed dolphin)

Gene Details

patched 2

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000003183, Bottlenosed dolphin)

Protein Percentage 78.08%
cDNA percentage 80.25%
Ka/Ks Ratio 0.52904 (Ka = 0.0801, Ks = 0.1515)

PTCH2ENSBTAG00000024137 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000033224, Cow)

Protein Percentage 87.16%
cDNA percentage 88.07%
Ka/Ks Ratio 0.26324 (Ka = 0.0826, Ks = 0.3137)

PTCH2 (Minke Whale)

Gene Details

patched 2

External Links

Gene match (Identifier: BACU000331, Minke Whale)

Protein Percentage 81.29%
cDNA percentage 84.01%
Ka/Ks Ratio 0.64415 (Ka = 0.1277, Ks = 0.1982)

Additional orthologs identified in other species via the OPTIC pipeline.

PTCH2 (Human)   Ptch2 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 3528 bp    Location:99745..83957   Strand:-
Raw sequence 
>bmy_19784
ATGCCCCCCATCCCTGCCAGCATGGCTCGGCCGCCACCCCTCGGGGAGCTGCCCCCGGGCTACACACCCCCAGCTCGATCTGCAGCACCCCAGATCCTAGCTGGGAGCCTTCAGGCTCCACTCTGGCTTCGTGCTTACTTCCAGGGCCTGCTCTTCTCTCTGGGCTGCGGGATCCAGAGACACTGTGGCAAAGTGCTCTTCCTGGGACTTTTGGCCTTTGGGGCCCTAGCACTGGGTCTCCGCGTGGCCATCATTGAGACAGACCTAGAACAGCTCTGGGTGGAAGCGGGCAGCCGGGTGAGCCAAGAGCTGCAATACACCAAGGAGAAGCTGGGGGAGGAGGCTGCATACACCTCCCAGATGTTGATACAGACCCCGCGCCAGGAGGGGGAGAATGTCCTCACGCCTGAGGCACTTGGCCTCCACCTCCAGGCAGCCCTCACCGCCAGTAAAGTGCAAGTATCACTCTATGGAAAGTCCTGGGATTTGAACAAAATCTGCTACAAGTCAGGAGTTCCCCTAATTGAAAATGGAATGATTGAGCGGATGATTGAGAAGCTGTTTCCCTGCGTGATCCTTACCCCCCTCGACTGCTTCTGGGAAGGAGCCAAACTCCAAGGGGGCTCTGCCTACTTGCCGGGCCGCCCCGACATCCAGTGGACCAACCTGGATCCAGAGCAGCTGCTGGAGGAGCTGGGCCCCTTTGCCTCCCTTGAGGGCTTCCGGGAGCTGCTAGATAAGGCACAGGTGGGCCAGGCCTACGTGGGGCGGCCCTGTCTGCGCCCTGACGACCTCCACTGCCCATCTAGTGCCCCTAACCATCACAGCAGGCAGGCTCCCAATGTGGCTCAGGAGTTGAGCGGGGGCTGCCATGGCTTCTCCCACAAGTTCATGCACTGGCAGGAGGAACTGCTGCTGGGAGGCCTGGCCAGAGACCCCCGAGGACAGCTGCTGAGGGCAGAGGCCCTGCAGAGCACTTTCCTGCTGATGAGTCCCCGCCAGCTCTATGAGCACTTCCGGGGCGACTACCAGACACATGACATCGGCTGGAGCGAAGAGCAGGCCGGCACGGTGCTGCAGGCCTGGCAGCGGCGCTTCGTGCAGCTGGCGCAGGAGGCCCTGCCTGGGAACGCGTCCCAGCAGATCCACGCCTTCTCCTCCACCACCCTGGATGACATCCTGCACGCCTTCTCTGAAGTCAGCGCTGCCCGCGTGGTGGGAGGCTACCTGCTCATGCTGGCCTACGCCTGCGTGACAATGCTGCGGTGGGACTGTGCTCAGTCCCAGGGTGCCGTGGGCCTCGCCGGGGTGTTGCTGGTGGCCCTGGCGGTGGCCTCGGGCCTCGGGCTCTGCGCCCTGCTCGGCATCGCCTTCAATGCCGCCACTACCCAGGTACACCAAGACTGCGGGGCAGACTTGGGGGCCGACGGCCCAGGCTGCTCGGTTCCTCCAGCTGCCCGCCCCGTGCCCCTCCAGGTGCTGCCCTTCTTGGCACTGGGCATTGGCGTGGATGACATATTCCTGCTGGCACATGCCTTCACAGAGGCTCCACCTGGCACCCCTCTCCAGGCGGCAGTAGTGGTTGGCTGCAACTTTGCAGCCGTGATGCTTGTCTTCCCAGCGGTCCTCAGCCTGGACCTGCACCGGCGCCACTGCCAGCGCCTTGATGTGCTCTGCTGCTTCTCTAGCCCCTGCTCTGCTCGGGTGATTCAGATTCTGCCCCAGGAGCTGGGGGATAGGACAGTATCAGTGGGCATTGCTCACCTGACTGCCACTGTTCAGGCATTTGCGCACTGTGAAGCCAGCAGCCAGCATGTGGTCACCATCCTGCCTCCCCAAGCCCACCTGGTGCCCCCACCTTCTGACCCACTGGCCTCTGAGCTCTTCAGCCCAGGAGGGTCAACACGGGACCTTCTAGGCCAGGAGGAGGGGACAAGGCAGAAGGCAGCCTGCAAGTCCCTGGCCTGTGCCCGCTGGAATCTTGCCCATTTCGCCCGATCTCAGTTTGCACCCTTGCTGCTCCAGTCCCACACCAAGGCCATGGTGCTGGTACTTTTTGGGGCTCTTCTGGGCCTGAGCCTCTATGGATCGACCTTGGTGCAGGATGGGCTGGCCCTGACAGATGTGGTGCCTCGGGGCACCAAGGAGCATGCCTTCCTGAGCGCCCAGCTCAGGTACTTCTCTCTGTACGAGGTGGCCGTGGTGACACAGGGTGGCTTTGACTACGCCCACTCCCAACGCGCCCTCTTTGATCTGCACCAGCGCTTCAGTTCCCTCAAGGCGGTGCTGCCCCCACCGGCCACGCAGGCACCCCGCACCTGGCTGCACTATTACCGCAACTGGCTACAGGGAATCCAGGCTGCGTTTGACCAGGACTGGGCTTCTGGGCGCATCACCCGCCACTCATACCGCAATGGCTCTGAGGATGGGGCCCTAGCCTACAAGCTGCTCATCCAGACCGGGGATGCCCAGGAGCCTCTGGATTTCAGCCAGCTGACCACAAGGAAGCTGGTGGACAAGGACGGGCTGATTCCACCTGAGCTCTTCTACATGGGGCTGACCATGTGGGTGAGCAGTGACCCCCTGGGTCTGGCAGCCTCACAGGCCAACTTCTACCCCCCACCTCCCGAGTGGCTGCATGACATGTACGACACCACCGGGGAGAACCTTCGCATCCCGGCGGCCCAGCCCCTGGAGTTTGCCCAGTTCCCCTTTCTACTGCGCGGCCTCCAGAAGACTGCAGACTTCGTGGAGACCATTGAGGGGGCCCGGGCAGCGTGTGCCGAGGCAGGCCGGGCCGGGGTGCGTGCCTACCCCAGCGGCTCCCCCTTCCTCTTCTGGGAGCAGTATCTGGGCCTGCGGCGCTGCTTCCTGCTGGCAGTCTGCATCCTGCTGGTGTGCACTTTCCTCGTCTGCGCCCTGCTGCTGCTCAACCCCTGGGCAGCTTCCCTCATAGTACTGGTCCTGGCAGTGATGACCGTGGAGCTCTTTGGCATCATGGGTTTCCTGGGCATCAAGCTGAGCGCCATCCCCGTGGTGATCCTTGTGGCGTCTGTAGGCATTGGTGTCGAGTTCACGGGCTTCCTGACCTCCCAGGGTAGCCGGAACCTCCGGGCTGCCCGGGCCCTAGAGCACACATTGGCCCCGGTGACCGATGGGGCCGTCTCCACATTGCTGGGTCTGCTCATGCTTGCTGGTTCCAACTTTGACTTCATTGTAAGGTACTTCTTCGTGGTGCTGACAGTACTCACACTCCTAGGCCTCCTCCATGGGCTCGTGCTGCTGCCTGTGCTGCTGTCCATCCTGGGCCCCCCACCAGAGGTGACCACCCTCCTTCTGCTCCCAGCCCAGGGGATGGGGTGGAACAGAGCCAGGGCAAAATGCCCTCAGCGGCCAACAGACAGGGCTCAACTCACAGGGACCTCTCCCCATAAGTACCACCAACTGAAGGTGGCAGCCTCCCCCTTCGCCCAGACATCATGTCCCTACCCCTCAGCCCTCCTGACTTCTTCATGGGACCCACCTTAG

Related Sequences

bmy_19784T0 SequenceType object (3)

Length: 1176 aa      View alignments
>bmy_19784T0
MPPIPASMARPPPLGELPPGYTPPARSAAPQILAGSLQAPLWLRAYFQGLLFSLGCGIQRHCGKVLFLGLLAFGALALGLRVAIIETDLEQLWVEAGSRVSQELQYTKEKLGEEAAYTSQMLIQTPRQEGENVLTPEALGLHLQAALTASKVQVSLYGKSWDLNKICYKSGVPLIENGMIERMIEKLFPCVILTPLDCFWEGAKLQGGSAYLPGRPDIQWTNLDPEQLLEELGPFASLEGFRELLDKAQVGQAYVGRPCLRPDDLHCPSSAPNHHSRQAPNVAQELSGGCHGFSHKFMHWQEELLLGGLARDPRGQLLRAEALQSTFLLMSPRQLYEHFRGDYQTHDIGWSEEQAGTVLQAWQRRFVQLAQEALPGNASQQIHAFSSTTLDDILHAFSEVSAARVVGGYLLMLAYACVTMLRWDCAQSQGAVGLAGVLLVALAVASGLGLCALLGIAFNAATTQVHQDCGADLGADGPGCSVPPAARPVPLQVLPFLALGIGVDDIFLLAHAFTEAPPGTPLQAAVVVGCNFAAVMLVFPAVLSLDLHRRHCQRLDVLCCFSSPCSARVIQILPQELGDRTVSVGIAHLTATVQAFAHCEASSQHVVTILPPQAHLVPPPSDPLASELFSPGGSTRDLLGQEEGTRQKAACKSLACARWNLAHFARSQFAPLLLQSHTKAMVLVLFGALLGLSLYGSTLVQDGLALTDVVPRGTKEHAFLSAQLRYFSLYEVAVVTQGGFDYAHSQRALFDLHQRFSSLKAVLPPPATQAPRTWLHYYRNWLQGIQAAFDQDWASGRITRHSYRNGSEDGALAYKLLIQTGDAQEPLDFSQLTTRKLVDKDGLIPPELFYMGLTMWVSSDPLGLAASQANFYPPPPEWLHDMYDTTGENLRIPAAQPLEFAQFPFLLRGLQKTADFVETIEGARAACAEAGRAGVRAYPSGSPFLFWEQYLGLRRCFLLAVCILLVCTFLVCALLLLNPWAASLIVLVLAVMTVELFGIMGFLGIKLSAIPVVILVASVGIGVEFTGFLTSQGSRNLRAARALEHTLAPVTDGAVSTLLGLLMLAGSNFDFIVRYFFVVLTVLTLLGLLHGLVLLPVLLSILGPPPEVTTLLLLPAQGMGWNRARAKCPQRPTDRAQLTGTSPHKYHQLKVAASPFAQTSCPYPSALLTSSWDPP*