Part of scaffold_2197 (Scaffold)

For more information consult the page for scaffold_2197 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SMARCB1 ENSTTRG00000002048 (Bottlenosed dolphin)

Gene Details

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001924, Bottlenosed dolphin)

Protein Percentage 97.33%
cDNA percentage 96.71%
Ka/Ks Ratio 0.14937 (Ka = 0.0179, Ks = 0.1198)

SMARCB1 ENSBTAG00000009988 (Cow)

Gene Details

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000013170, Cow)

Protein Percentage 97.4%
cDNA percentage 93.77%
Ka/Ks Ratio 0.04257 (Ka = 0.016, Ks = 0.3747)

SMARCB1  (Minke Whale)

Gene Details

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1

External Links

Gene match (Identifier: BACU017147, Minke Whale)

Protein Percentage 97.61%
cDNA percentage 97.43%
Ka/Ks Ratio 0.1782 (Ka = 0.0155, Ks = 0.0869)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1356 bp    Location:111386..137434   Strand:+
>bmy_19806
TCTGCTGCGGCGGTGGAGGAGCCCGGCGGCGGCGCAAGCACCCGGCCCGGCTCGGCCAGCCCTTCGCCTCCGGCTTCGGCTTCCCTGGGCTCGGGGCGCCCCGGCCCCGCCTCAGCCCTCCTGACCCTCGCACCCCGGCCGTGGCCGCCCGACTCTGCCGCCGCAATGATGATGATGGCGCTGAGCAAGACCTTCGGGCAGAAGCCTGTCAAGTTCCAGCTGGAAGACGACGGCGAGTTCTACATGATCGGCTCTGAGGTGGGAAACTACCTCCGTATGTTCCGAGGTTCTCTGTACAAGAGATACCCCTCGCTCTGGAGGCGACTAGCCACTGTGGAAGAGAGGAAGAAAATAGTTGCATCGTCACATGGTAAAAAAACAAAACCTAACACTAAGGATCATGGATACACGACCCTGGCCACCAGCGTGACTCTGTTAAAAGCCTCCGAGGTGGAAGAGATTCTGGATGGCAACGATGAGAAGTACAAGGCCGTATCCATCAGCACGGAACCCCCCACCTACCTCAGGGAACAGAAGGCTAAGAGGAACAGCCAGTGGGTGCCCACCCTGCCCAACAGCTCCCACCACCTGGACGCCGTGCCCTGCTCCACCACCATCAACAGGAACCGCATGGGCCGGGACAAGAAGAGGACGTTCCCGCTGTGCTTCGACGACCACGACCCAGCTGTGATCCATGAGAACGCGTCCCAGCCCGAGGTGCTGGTTCCCATCCGACTGGACATGGAGATCGACGGGCAGAAGCTGCGGGATGCCTTTACCTGGAACATGAACGAGAAGCTGATGACCCCTGAGATGTTTTCAGAAATTCTCTGTGATGACCTGGATTTGAACCCACTGACGTTCGTACCAGCCATCGCCTCCGCCATCAGACAGCAGATCGAGTCCTATCCCACAGACAGCATCCTGGAGGACCAGTCAGACCAGCGTGTCATTATCAAGCTGAACATCCACGTGGGAAACATCTCCCTGGTGGACCAGTTTGAGTGGGACATGTCAGAGAAGGAGAACTCGCCGGAGAAGTTTGCCCTGAAGCTGTGCTCCGAGCTGGGGCTGGGTGGGGAGTTCGTCACCACCATCGCGTACAGCATCCGGGGACAGCTGAGCTGGCATCAGAAGACCTACGCCTTCAGTGAGAACCCCCTGCCCACGGTGGAGATTGCCATCCGGAACACAGGCGACGCTGATCAGTGGTGCCCGCTGCTGGAGACCCTGACAGACGCCGAGATGGAGAAGAAGATCCGCGACCAGGACAGGAACACAAGGTGCCTCCCCAGCCCCCTTTCCAGGCAGGACAGGACTGTCACCTTTTCCGAGACCCAGCAGGCCCCTGGATGA

Related Sequences

bmy_19806T0 Protein

Length: 452 aa      View alignments
>bmy_19806T0
SAAAVEEPGGGASTRPGSASPSPPASASLGSGRPGPASALLTLAPRPWPPDSAAAMMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRCLPSPLSRQDRTVTFSETQQAPG*