Sequence details bmy_19888 (Coding sequence)

Part of scaffold_2221 (Scaffold)

For more information consult the page for scaffold_2221 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RIMKLA ENSTTRG00000003607 (Bottlenosed dolphin)

Gene Details

ribosomal modification protein rimK-like family member A

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000003381, Bottlenosed dolphin)

Protein Percentage 99.08%
cDNA percentage 98.77%
Ka/Ks Ratio 0.10357 (Ka = 0.0041, Ks = 0.0398)

RIMKLA ENSBTAG00000017502 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000023262, Cow)

Protein Percentage 97.29%
cDNA percentage 95.21%
Ka/Ks Ratio 0.056 (Ka = 0.0119, Ks = 0.2118)

RIMKLA  (Minke Whale)

Gene Details

ribosomal modification protein rimK-like family member A

External Links

Gene match (Identifier: BACU000378, Minke Whale)

Protein Percentage 96.2%
cDNA percentage 96.79%
Ka/Ks Ratio 0.32285 (Ka = 0.0235, Ks = 0.0728)

Additional orthologs identified in other species via the OPTIC pipeline.

RIMKLA (Human)   Rimkla (Mouse)  

Genome Location

Sequence Coding sequence

Length: 1188 bp    Location:211445..239116   Strand:+
Raw sequence 
>bmy_19888
ATGTGCTCCCAGCTCTGGTTCCTGACGGACCGGCGCATCCGCGAGGACTACCCTCAGGTGCAGATCCTGCGCGCCCTCCGGCAGCGCTGCTCCGAGCAGGACGTGCGCTTCCGGGCGGTGCTCATGGACCAGATCGCCGTCACCATCGTCGGCGGCAACCTCGAAAAGCCAAGATTTCAGAGCTCACTTCTTCCTTTGATTGCAGGCCTGCAGCTGAACCAGAAGGCGCTCACCACTTTCCCAGACGTGGTGCTTGTCCGGGTGCCCACACCCTCAGTGCAGTCGGACAGTGACATCACCGTCCTGCGACACCTGGAGAAGTTGGGCTGCCGCTTAGTCAACCGCCCACAGAGCATTCTAAACTGCATCAACAAATTCTGGACATTCCAGGAGCTGGCTGGACATGGGGTCCCCATGCCGGACACCTTCTCCTATGGTGGGCATGAAGACTTTTCAAAAATGATCGATGAAGCCGAGCCGCTGGGCTACCCGGTCGTGGTGAAGAGCACACGCGGACACCGGGGAAAAGCTGTTTTTCTCGCAAGAGATAAACACCACCTCTCAGACATCTGCCATGTGATCCGCCACGATGTGCCCTACCTGTTCCAGAAGTACGTGAAGGAGTCCCACGGAAAGGATATCCGGGTGGTGGTAGTAGGTGGCCAGGTGATAGGCTCTATGCTTCGCTGCTCCACAGACGGACGGATGCAGAGCAACTGCTCTCTCGAACAAGGCAAGCAGCTGGCTATCCAGGTGTCCAACATCCTGGGCATGGACTTCTGTGGCATCGATCTCCTCATCATGGACGATGGCTCCTTTATGGTGTGCGAAGCAAATGCCAACGTGGGTTTCCTAGCCTTTGACCAGGCCTGCAACTTAGATGTGGGCGGGATCATTGCAGACTACACCATGTCCTTGCTGCCCAACAGGCAGACTGGGAAGATGGCTGTCCTCCCAGGACTGTCTAGTCCCAGGGAGAAGAAAGAGCCAGACAGCTGTGCTTCAGCTCAGGGAGTCACAGAGAGCGTCTACGCCATCAACAGCGGGTCTACCTCTAGCGAGAGCGAGCCTGAACTGGGAGAGATCCGGGGGTCCTCAGCAAGCACAGCGGGGGCCCCGGCCCCCATGCTGCCCGACCCTGGCTACAACATTAACACCAGGATTGCTTCAGAATTAAAACTTAAGTGA

Related Sequences

bmy_19888T0 Protein

Length: 396 aa      View alignments
>bmy_19888T0
MCSQLWFLTDRRIREDYPQVQILRALRQRCSEQDVRFRAVLMDQIAVTIVGGNLEKPRFQSSLLPLIAGLQLNQKALTTFPDVVLVRVPTPSVQSDSDITVLRHLEKLGCRLVNRPQSILNCINKFWTFQELAGHGVPMPDTFSYGGHEDFSKMIDEAEPLGYPVVVKSTRGHRGKAVFLARDKHHLSDICHVIRHDVPYLFQKYVKESHGKDIRVVVVGGQVIGSMLRCSTDGRMQSNCSLEQGKQLAIQVSNILGMDFCGIDLLIMDDGSFMVCEANANVGFLAFDQACNLDVGGIIADYTMSLLPNRQTGKMAVLPGLSSPREKKEPDSCASAQGVTESVYAINSGSTSSESEPELGEIRGSSASTAGAPAPMLPDPGYNINTRIASELKLK*