Sequence detailsbmy_19969 (Coding sequence)

Part of scaffold_2271 (SequenceType object (1))

For more information consult the page for scaffold_2271 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PPFIA4ENSTTRG00000000708 (Bottlenosed dolphin)

Gene Details

protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000000668, Bottlenosed dolphin)

Protein Percentage 81.71%
cDNA percentage 82.27%
Ka/Ks Ratio 0.33043 (Ka = 0.0153, Ks = 0.0463)

PPFIA4ENSBTAG00000015885 (Cow)

Gene Details

liprin-alpha-4

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000003689, Cow)

Protein Percentage 92.82%
cDNA percentage 93.23%
Ka/Ks Ratio 0.18584 (Ka = 0.0372, Ks = 0.2001)

Additional orthologs identified in other species via the OPTIC pipeline.

PPFIA4 (Human)   Ppfia4 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 3345 bp    Location:88278..124963   Strand:+
Raw sequence 
>bmy_19969
ATGTGTGAAGTGATGCCCACAATCAACGAGGGGGACCCCCTGGGGCCTCCCCATGGAACGGATGCTGACGCCAACTTTGAGCAGCTGATGGTGAACATGCTGGATGAGCGGGAGAAGTTGCTAGAGTCCCTTCGGGAGAGTCAGGAGACTTTGGCGGCGACACAGAGCTGGCTACAGGATGCCCTGCATGAGCGAGACCAGCTCCAGCGCCACCTTAACTCTGCCCTTCCCCAGGAATTTGCCACCTTAACCCGGGAGCTGAGTATGTGTCGGGAGCAGCTTCTAGAGAGGGAGGAAGAGATATCAGAGCTGAAAGCAGAGCGGAATAACACGAGGTTGCTTCTGGAACATCTGGAGTGCCTAGTGTCCCGTCATGAGCGGTCACTGAGGATGACTGTGGTGAAGCGTCAGGCTCAGTCACCTTCAGGGGTTTCCAGTGAGGTGGAGGTGCTGAAGGCTCTCAAGTCACTGTTTGAGCACCACAAGGCCCTGGATGAGAAGGTGCGAGAGCGGCTCCGGGTGGCCCTGGAGAGAGTGACCACCTTGGAAGAGCAGTTGGCGGGTGCCCACCAGCAGGTGTCTGCCCTACAGCAGGAGGCAGGGGTTCAGGATGGAGTGGCAGAAGAGGAGGGGACTGTGGAACTGGGACCGAAATGCCTGTGGAAGCATGACGCGGGCCAGGTAGAAGAGCTGCAGGAGCTCCTGGAGAAGCAGAACTTTGAGTTGAGCCAGGCCCGGGAGCGACTGGTCACCCTGACAGCAACCGTGGCCGAACTTGAGGAGGACCTGGGCACGGCCCGCCGGGACCTTATCAAGTCGGAGGAGCTGAGCAGCAAACATCAGCGGGACCTCCGGGAAGTGAGCAAGGGCCTGGGCCTGACCCTATCTTTCTGGGTGCAGGCTCTAGCCCAGAAGGAGGACATGGAGGAGCGAATAACCACACTGGAGAAGCGCTACCTGGCTGCTCAGCGTGAGGCTACATCGATTCATGACCTCAACGACAAACTGGAGAATGAGCTGGCCAATAAGGAGTCCCTGCACCGCCAGTGTGAGGAGAAAGCCCAACATCTGCAGGAGCTGCTGGAGGTAGCAGAGCAGAAACTGCAGCAGACGATGCGCAAGGCTGAGACGCTGCCAGAGGTGGAGGCTGAGCTGGCCCAGAGAATTGCAGCCCTCACCAAGGCAAGTCTGAGCAGGAAGGCAGATGATCTTCAGGCTGCACTGACCCATTCCTCCCTCCAGGCTGAAGAGCGGCATGGCAACATTGAGGAGCACCTGCGGCAGCTGGAGGGACAGCTGCAGGAAAAGAACCAAGAGCTGGCAAGGGTGCGCCAGCGGGAGAAGATGAACGAGGACCACAACAAGCGACTGTCAGACACCGTGGACCGACTGCTTAGCGAGTCGAATGAGCGCCTGCAGCTCCACCTCAAGGAGCGCATAGCGGCCCTGGAGGAGAAGAACACACTGATCCAAGAGCTGGAGAGTTCCCAGCGGCAGATTGAAGAGCAACACCATCACAAGGGCCGCCTGTCTGAAGAGATTGAGAAGCTGCGCCAAGAGGTGGACCAGCTGAAGGGTCGAGGAGGGCCATTTGTGGATGGCATCCACTCCAGGGCGCACATAGGCAGTGCAGCAGATGTGCGGTTCTCCCTGAGCACAACCTCCCACGCACCTCAAGGTCTGCATCGTTGCTACTCAGCACTGCGGGAAGAGTCTGCCAAGGACTGGGAGCCATCTCCACTGCCTGGGGTGCTGGTCCCCACAGCCACCCCTGCCTTTGACAGTGACCCTGAGATCTCTGATGTGGATGAGGATGAGCCAGGGGGTCTGGTGGGCTCCATGGACGTTGTCTCCCCCAGCAGCCACTCAGACGCCCAGACCCTGGCCATGATGCTGCAGGAGCAGCTGGATGCTATCAACGAGGAGATCAGGATGATCCAGGAAGAGAAGGAGTCCACAGAGCTCCGTGCTGAGGAGATTGAGACACGAGTGACTAGTGGCAGCATGGAGGCCCTAAACCTGACCCAGCTGCGCAAACGTGGTTCCATCCCCACCTCTCTGACTGCCCTGTCCCTGGCCAGTGCATCCCCTCCATTCAGCAGCCGCTCCACACCTAAGCTTACTTCCCGCAGTGCTACCCAGGACCTGGACCGAATGGGGGTCATGACCTTGTCACCAGTGTCTCGGGAAGAGAACCGAGAGGATAAAGCCACCATAAAATTTCTGCTAACAGACTCTGAGCTCGGTCTGCAGGAGCCCATGGTACCTACCAAGCTGGGGACCCAGGCAGAAAAGGACCGGCGGCTGAAGAAGAAACACCAGCTGCTTGAAGATGCCCGCAGAAAAGGAATGCCCTTTGCCCAGTGGGACGGCCCTACTGTGGTCTCCTGGCTAGAGCTCTGGGTGGGGATGCCTGCTTGGTATGTGGCAGCCTGCCGGGCCAACGTCAAGAGTGGTGCCATCATGTCAGCCCTCTCGGACACAGAGATCCAGCGGGAAATTGGCATCAGCAATGCCCTGCACCGGCTCAAGCTCCGGCTGGCTATCCAGGAGATGGTGTCGCTGACCAGCCCCTCTGCCCCGCCCACCTCCAGGACTACCCTGGCCTATGGGGACATGAACCACGAGTGGATTGGGAACCAGTGGCTGCCCAGCCTGGGGCTCCCCCAGTACCGCAGCTACTTCATGGAGTGCCTTGTGGACGCTCGCATGCTGGATCACCTCACCAAGAAGGACCTGCGGGTCCATCTGAAGATGGTGGACAGCTTCCACCGAACCAGTCTTCAGTATGGCATCATGTGTCTGAAGAGGCTGAATTATGACCGGAAGGAGCTGGAGAAGAGGCGGGAAGAAAGCCAGCATGAGATCAAGGATGTGCTGGTCTGGACCAACGACCAGGTGGTTCATTGGGTCCAGTCTATTGGGCTCCGGGACTATGCAGGAAACCTGCATGAGAGTGGTGTGCATGGTGCTCTGCTGGCCCTGGACGAGAACTTCGACCACAACGCGTTGGCCCTGGTCCTCCAGATACCCACGCAGAATACCCAGGCACGCCAGGTGATGGAGAGAGAGTTCAACAACCTGTTGGCCTTGGGCACAGACCGGAAGCTGGATGATGGGGAGGACAAGGTGTTCCGCCGCACGCCCTCCTGGAGGAAACGCTTCCGGCCGCGGGACCACCACGGCAGCGCCATGCTCAGCGCCTCTCACGAAACGCTCCCGGTAGGCTTCCGCGTGTCCACCCTGGGGCCATTGAAGCCTCCACCGGCCCCGCCAAAGAAGATCATGCCTGAAGCTCACTCTCACTATCTCTACGGACACATGCTCTCCGCCTTCCGGGACTAG

Related Sequences

bmy_19969T0 SequenceType object (3)

Length: 1115 aa      View alignments
>bmy_19969T0
MCEVMPTINEGDPLGPPHGTDADANFEQLMVNMLDEREKLLESLRESQETLAATQSWLQDALHERDQLQRHLNSALPQEFATLTRELSMCREQLLEREEEISELKAERNNTRLLLEHLECLVSRHERSLRMTVVKRQAQSPSGVSSEVEVLKALKSLFEHHKALDEKVRERLRVALERVTTLEEQLAGAHQQVSALQQEAGVQDGVAEEEGTVELGPKCLWKHDAGQVEELQELLEKQNFELSQARERLVTLTATVAELEEDLGTARRDLIKSEELSSKHQRDLREVSKGLGLTLSFWVQALAQKEDMEERITTLEKRYLAAQREATSIHDLNDKLENELANKESLHRQCEEKAQHLQELLEVAEQKLQQTMRKAETLPEVEAELAQRIAALTKASLSRKADDLQAALTHSSLQAEERHGNIEEHLRQLEGQLQEKNQELARVRQREKMNEDHNKRLSDTVDRLLSESNERLQLHLKERIAALEEKNTLIQELESSQRQIEEQHHHKGRLSEEIEKLRQEVDQLKGRGGPFVDGIHSRAHIGSAADVRFSLSTTSHAPQGLHRCYSALREESAKDWEPSPLPGVLVPTATPAFDSDPEISDVDEDEPGGLVGSMDVVSPSSHSDAQTLAMMLQEQLDAINEEIRMIQEEKESTELRAEEIETRVTSGSMEALNLTQLRKRGSIPTSLTALSLASASPPFSSRSTPKLTSRSATQDLDRMGVMTLSPVSREENREDKATIKFLLTDSELGLQEPMVPTKLGTQAEKDRRLKKKHQLLEDARRKGMPFAQWDGPTVVSWLELWVGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNALHRLKLRLAIQEMVSLTSPSAPPTSRTTLAYGDMNHEWIGNQWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIMCLKRLNYDRKELEKRREESQHEIKDVLVWTNDQVVHWVQSIGLRDYAGNLHESGVHGALLALDENFDHNALALVLQIPTQNTQARQVMEREFNNLLALGTDRKLDDGEDKVFRRTPSWRKRFRPRDHHGSAMLSASHETLPVGFRVSTLGPLKPPPAPPKKIMPEAHSHYLYGHMLSAFRD*