Part of scaffold_2274 (Scaffold)

For more information consult the page for scaffold_2274 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SMC1A ENSTTRG00000011412 (Bottlenosed dolphin)

Gene Details

structural maintenance of chromosomes 1A

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000010833, Bottlenosed dolphin)

Protein Percentage 99.92%
cDNA percentage 99.24%
Ka/Ks Ratio 0.00983 (Ka = 0.0003, Ks = 0.0348)

BT.91789 ENSBTAG00000017761 (Cow)

Gene Details

Structural maintenance of chromosomes protein 1A

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000023619, Cow)

Protein Percentage 100.0%
cDNA percentage 97.0%
Ka/Ks Ratio 0.001 (Ka = 0.0001, Ks = 0.1354)

SMC1A  (Minke Whale)

Gene Details

structural maintenance of chromosomes 1A

External Links

Gene match (Identifier: BACU010674, Minke Whale)

Protein Percentage 98.9%
cDNA percentage 98.62%
Ka/Ks Ratio 0.02604 (Ka = 0.0004, Ks = 0.0145)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 3702 bp    Location:260690..294023   Strand:+
>bmy_20031
ATGGGTTTCCTGAAGCTGATTGAGATCGAGAACTTTAAGTCGTACAAGGGTCGGCAGATTATCGGACCATTTCAGAGGTTCACCGCCATCATTGGACCCAATGGCTCTGGTAAGTCAAATCTCATGGATGCCATCAGCTTTGTGTTGGGTGAGAAAACCAGCAACCTGCGGGTGAAGACCCTGAGGGACCTGATCCATGGAGCTCCTGTGGGCAAGCCAGCTGCCAACCGGGCCTTTGTCAGCATGGTCTACTCTGAGGAGGGTGCTGAGGACCGCACCTTTGCCCGTGTCATTGTTGGGGGTTCCTCTGAGTACAAGATCAACAACAAAGTGGTCCAGCTACATGAGTACAGTGAGGAATTAGAGAAGTTGGGCATTCTTATCAAAGCTCGTAACTTCCTCGTCTTCCAGGGCGCTGTGGAATCTATTGCCATGAAGAACCCCAAAGAGAGGACAGCTCTTTTTGAAGAGATCAGTCGCTCTGGGGAGCTGGCCCAGGAATATGACAAGCGAAAAAAGGAAATGGTGAAAGCTGAAGAGGACACGCAGTTTAATTACCATCGCAAAAAAAACATCGCAGCTGAACGCAAGGAGGCMAAACAAGAAAAAGAAGAGGCTGACCGCTACCAGCGCCTGAAGGATGAGGTGGTGCGAGCTCAGGTACAGTTGCAACTTTTCAAACTTTATCATAATGAAGTGGAAATCGAGAAGCTCAACAAAGAACTGGCCTCTAAGAACAAGGAGATCGAGAAGGACAAGAAGCGGATGGACAAGGTAGAGGATGAGCTGAAGGAGAAGAAGAAGGAGCTGGGCAAAATGATGCGGGAGCAGCAGCAGATTGAGAAGGAGATCAAGGAGAAGGACTCAGAGCTGAACCAGAAGCGGCCTCAGTACATCAAAGCCAAGGAGAATACCTCCCACAAAATCAAGAAGCTGGAAGCAGCCAAGAAGTCCCTACAGAATGCTCAGAAGCATTACAAGAAGCGTAAAGGTGACATGGATGAGCTGGAAAAGGAGATGCTGTCAGTGGAGAAAGCCCGGCAGGAGTTTGAGGAACGGATGGAAGAGGAGAGTCAGAGTCAGGGCAGAGATTTGACCCTGGAGGAGAATCAGGTGAAGAAATATCACCGGTTGAAAGAAGAAGCCAGCAAGAGAGCAGCTACCCTGGCCCAGGAGCTGGAGAAGTTCAATCGAGACCAGAAGGCCGACCAGGACCGGCTGGATCTGGAAGAGCGGAAGAAAGTAGAGACAGAGGCCAAGATCAAGCAAAAGCTGAGGGAGATTGAAGAGAATCAGAAGCGGATTGAGAAACTGGAGGAATACATCACAACTAGCAAGCAGTCCCTCGAGGAGCAGAAGAAGCTAGAGGGGGAGCTGACAGAGGAGGTGGAGATGGCCAAGCGGCGAATTGATGAGATCAATAAGGAGCTGAACCAGGTGATGGAGCAGCTGGGGGATGCACGCATTGACCGCCAGGAGAGCAGCCGCCAACAGCGAAAGGCAGAAATTATGGAAAGCATCAAGCGCCTGTACCCTGGCTCTGTGTACGGCCGCCTCATTGACCTCTGCCAGCCCACACAAAAGAAGTATCAGATTGCAGTAACCAAGGTTTTGGGTAAGAACATGGATGCCATTATTGTGGACTCAGAGAAGACAGGCCGGGACTGTATTCAGTATATCAAGGAGCAGCGTGGGGAGCCTGAGACCTTCTTGCCTCTTGATTACCTGGAGGTGAAACCTACAGATGAGAAACTCCGGGAGCTGAAGGGGGCCAAGCTGGTGATTGATGTTATTCGCTATGAGCCACCTCACATCAAAAAAGCCCTGCAGTACGCCTGTGGCAATGCCCTTGTCTGTGACAATGTGGAGGATGCCCGCCGCATTGCCTTTGGAGGCCACCAGCGCCACAAGACAGTGGCACTGGATGGGACCCTGTTCCAGAAGTCAGGGGTGATCTCTGGCGGGGCTAGTGATCTGAAGGCCAAGGCCCGGCGCTGGGATGAGAAAGCAGTAGACAAGTTGAAAGAGAAGAAAGAGCGGTTGACGGAAGAGCTGAAGGAGCAGATGAAGGCAAAGCGGAAAGAGGCAGAACTACGTCAGGTGCAGTCTCAGGCCCACGGACTGCAGATGCGGCTCAAGTACTCACAGAGTGACCTAGAACAGACCAAGACACGGCATCTGGCCCTGAATCTGCAGGAAAAGTCCAAGCTGGAGAGTGAGCTAGCCAACTTTGGGCCTCGAATCAATGATATCAAGAGGATCATCCAGAGTCGAGAGAGGGAAATGAAAGACTTGAAGGAGAAAATGAACCAGGTAGAGGATGAGGTATTTGAAGAGTTTTGTCGGGAGATTGGTGTGCGCAACATCCGGGAGTTTGAGGAAGAGAAGGTGAAGCGGCAGAATGAAATCGCCAAGAAGCGTTTGGAGTTCGAGAATCAGAAGACTCGCTTGGGCATCCAATTGGATTTTGAAAAGAACCAACTGAAGGAGGACCAGGATAAAGTACACATGTGGGAGCAGACAGTGAAAAAAGATGAAAATGAGATAGAAAAGCTCAAGAAGGAGGAACAAAGACACATGAAGATCATAGATGAGACCATGGCCCAGCTACAAGACCTGAAGAATCAGCACCTGGCCAAGAAGTCAGAGGTGAATGACAAGAACCATGAGATGGAGGAGATTCGTAAGAAACTGGGGGGCGCCAACAAGGAAATGACCCATTTACAGAAGGAGGTGACAGCCATTGAGACCAAGCTTGAACAGAAACGCAGTGACCGCCACAACCTGCTACAGGCCTGCAAGATGCAGGACATCAAGTTGCCACTGTCTAAGGGCACCATGGATGATATTAGTCAGGAAGAGGGTAGCTCCCAGGGGGAGGATTCAGTGAGTGGCTCCCAACGAACTTCCAATATCTATGCACGAGAGGCCCTCATCGAGATTGACTACGGCGACCTGTGTGAGGATCTGAAGGATGCCCAGGCCGAGGAGGAGATCAAGCAGGAGATGAACACACTGCAGCAGAAGCTGAATGAGCAGCAGAGTGTGCTCCAGCGTATTGCTGCCCCCAACATGAAGGCCATGGAAAAGCTGGAAAGTGTCCGAGACAAGTTCCAGGAAACCTCAGACGAGTTTGAGGCAGCCCGAAAGCGAGCCAAGAAGGCCAAGCAGGCATTTGAACAGATCAAGAAGGAGCGCTTTGACCGCTTCAATGCCTGTTTTGAATCAGTGGCCACCAACATTGATGAGATCTACAAGGCCCTGTCCCGTAACAGCAGTGCCCAGGCATTCCTGGGCCCTGAGAACCCCGAGGAGCCCTACTTGGATGGCATCAACTACAACTGTGTGGCTCCTGGCAAACGCTTCCGGCCCATGGACAACTTGTCAGGGGGGGAAAAAACAGTGGCAGCTCTGGCCCTGCTCTTTGCCATCCACAGCTACAAGCCAGCCCCCTTCTTCGTCCTGGATGAGATCGATGCTGCCCTGGATAACACCAACATTGGCAAGGTAGCAAATTACATCAAGGAGCAGTCGACTTGCAACTTCCAAGCCATCGTCATTTCTCTCAAGGAGGAGTTCTACACCAAGGCTGAGAGCCTCATTGGAGTCTACCCCGAGCAAGGGGACTGTGTGATCAGCAAAGTCCTGACCTTCGACCTCACCAAGTACCCAGATGCCAACCCCAACCCCAATGAGCAGTAG

Related Sequences

bmy_20031T0 Protein

Length: 1234 aa      View alignments
>bmy_20031T0
MGFLKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELEKLGILIKARNFLVFQGAVESIAMKNPKERTALFEEISRSGELAQEYDKRKKEMVKAEEDTQFNYHRKKNIAAERKEAKQEKEEADRYQRLKDEVVRAQVQLQLFKLYHNEVEIEKLNKELASKNKEIEKDKKRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYIKAKENTSHKIKKLEAAKKSLQNAQKHYKKRKGDMDELEKEMLSVEKARQEFEERMEEESQSQGRDLTLEENQVKKYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKVETEAKIKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRIDEINKELNQVMEQLGDARIDRQESSRQQRKAEIMESIKRLYPGSVYGRLIDLCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTDEKLRELKGAKLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGASDLKAKARRWDEKAVDKLKEKKERLTEELKEQMKAKRKEAELRQVQSQAHGLQMRLKYSQSDLEQTKTRHLALNLQEKSKLESELANFGPRINDIKRIIQSREREMKDLKEKMNQVEDEVFEEFCREIGVRNIREFEEEKVKRQNEIAKKRLEFENQKTRLGIQLDFEKNQLKEDQDKVHMWEQTVKKDENEIEKLKKEEQRHMKIIDETMAQLQDLKNQHLAKKSEVNDKNHEMEEIRKKLGGANKEMTHLQKEVTAIETKLEQKRSDRHNLLQACKMQDIKLPLSKGTMDDISQEEGSSQGEDSVSGSQRTSNIYAREALIEIDYGDLCEDLKDAQAEEEIKQEMNTLQQKLNEQQSVLQRIAAPNMKAMEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGVYPEQGDCVISKVLTFDLTKYPDANPNPNEQ*