Part of scaffold_2351 (Scaffold)

For more information consult the page for scaffold_2351 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TARDBP ENSTTRG00000001312 (Bottlenosed dolphin)

Gene Details

TAR DNA binding protein

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001232, Bottlenosed dolphin)

Protein Percentage 99.51%
cDNA percentage 99.35%
Ka/Ks Ratio 0.27492 (Ka = 0.0043, Ks = 0.0155)

TARDBP ENSBTAG00000003697 (Cow)

Gene Details

TAR DNA-binding protein 43

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000054152, Cow)

Protein Percentage 99.52%
cDNA percentage 96.3%
Ka/Ks Ratio 0.01447 (Ka = 0.0022, Ks = 0.1532)

TARDBP  (Minke Whale)

Gene Details

TAR DNA binding protein

External Links

Gene match (Identifier: BACU018472, Minke Whale)

Protein Percentage 100.0%
cDNA percentage 99.52%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0208)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1350 bp    Location:21447..30745   Strand:+
>bmy_20127
CATTTTGTGGGAGCGAAGTGGTCGCTGGGCTGCTCTTGGATTCCTCGCTGCTTCAGTGTCCCTGTCGGGCTTCCTAGCAGCGGCCTAGCGGCAAGACAAGTAAAGATGTCCGAATATATTCGGGTAACCGAAGATGAGAATGACGAGCCCATTGAAATACCATCAGAAGACGATGGGACAGTGCTGCTGTCCACAGTTACAGCCCAGTTTCCAGGGGCATGTGGGCTTCGCTACAGGAATCCAGTGTCTCAATGTATGAGAGGTGTCCGTCTGGTAGAAGGAATTCTGCACGCCCCTGATGCTGGCTGGGGGAACCTGGTGTATGTTGTCAACTATCCCAAAGATAACAAAAGGAAAATGGATGAAACAGATGCTTCATCAGCAGTGAAAGTGAAAAGAGCAGTCCAGAAAACATCTGATTTAATAGTGTTGGGTCTCCCATGGAAAACAACTGAACAGGATCTAAAAGAATATTTTAGTACCTTTGGAGAAGTTCTTATGGTTCAGGTCAAGAAAGATATTAAAACTGGTCATTCAAAAGGGTTTGGCTTTGTTCGTTTTACGGAATATGAAACCCAGGTGAAAGTAATGTCACAGCGACATATGATAGATGGACGATGGTGTGACTGTAAACTTCCAAATTCTAAGCAAAGCCCAGATGAGCCTTTGAGAAGCAGAAAGGTGTTTGTTGGGCGTTGTACGGAAGACATGACTGCTGATGAGTTGCGGCAGTTTTTTTGCCAGTACGGAGAAGTGGTAGATGTCTTCATTCCCAAACCGTTCAGGGCTTTTGCCTTTGTTACGTTTGCAGATGATCAGGTTGCCCAGTCTCTTTGTGGAGAGGACTTGATCATTAAAGGAATCAGCGTACATATATCCAATGCTGAACCTAAACACAATAGCAATAGACAGTTAGAAAGAAGTGGAAGATTTGGTGGTAATCCAGGTGGCTTTGGGAATCAGGGTGGATTTGGTAACAGTAGAGGGGGTGGAGCTGGTTTGGGAAACAATCAAGGTAGTAATATGGGCGGAGGGATGAACTTTGGTGCTTTTAGCATTAATCCAGCAATGATGGCTGCAGCCCAGGCAGCTCTGCAGAGCAGCTGGGGTATGATGGGCATGTTAGCCAGTCAGCAGAACCAGTCAGGCCCATCGGGTAATAACCAAAGCCAAGGCAACATGCAGAGGGAGCCAAATCAGGCTTTTGGTTCTGGAAATAACTCTTATACTGGTTCTAATTCAGGTGCAGCAATTGGTTGGGGATCAGCATCAAATGCAGGGTCAGGCAGTGGTTTTAATGGAGGCTTTGGCTCAAGCATGGATTCTAAATCTTCTGGCTGGGGAATGTAG

Related Sequences

bmy_20127T0 Protein

Length: 450 aa      View alignments
>bmy_20127T0
HFVGAKWSLGCSWIPRCFSVPVGLPSSGLAARQVKMSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQSQGNMQREPNQAFGSGNNSYTGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM*