Sequence detailsbmy_20127 (Coding sequence)

Part of scaffold_2351 (SequenceType object (1))

For more information consult the page for scaffold_2351 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TARDBPENSTTRG00000001312 (Bottlenosed dolphin)

Gene Details

TAR DNA binding protein

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000001232, Bottlenosed dolphin)

Protein Percentage 99.51%
cDNA percentage 99.35%
Ka/Ks Ratio 0.27492 (Ka = 0.0043, Ks = 0.0155)

TARDBPENSBTAG00000003697 (Cow)

Gene Details

TAR DNA-binding protein 43

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000054152, Cow)

Protein Percentage 99.52%
cDNA percentage 96.3%
Ka/Ks Ratio 0.01447 (Ka = 0.0022, Ks = 0.1532)

TARDBP (Minke Whale)

Gene Details

TAR DNA binding protein

External Links

Gene match (Identifier: BACU018472, Minke Whale)

Protein Percentage 100.0%
cDNA percentage 99.52%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0208)

Additional orthologs identified in other species via the OPTIC pipeline.

TARDBP (Human)   Tardbp (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1350 bp    Location:21447..30745   Strand:+
Raw sequence 
>bmy_20127
CATTTTGTGGGAGCGAAGTGGTCGCTGGGCTGCTCTTGGATTCCTCGCTGCTTCAGTGTCCCTGTCGGGCTTCCTAGCAGCGGCCTAGCGGCAAGACAAGTAAAGATGTCCGAATATATTCGGGTAACCGAAGATGAGAATGACGAGCCCATTGAAATACCATCAGAAGACGATGGGACAGTGCTGCTGTCCACAGTTACAGCCCAGTTTCCAGGGGCATGTGGGCTTCGCTACAGGAATCCAGTGTCTCAATGTATGAGAGGTGTCCGTCTGGTAGAAGGAATTCTGCACGCCCCTGATGCTGGCTGGGGGAACCTGGTGTATGTTGTCAACTATCCCAAAGATAACAAAAGGAAAATGGATGAAACAGATGCTTCATCAGCAGTGAAAGTGAAAAGAGCAGTCCAGAAAACATCTGATTTAATAGTGTTGGGTCTCCCATGGAAAACAACTGAACAGGATCTAAAAGAATATTTTAGTACCTTTGGAGAAGTTCTTATGGTTCAGGTCAAGAAAGATATTAAAACTGGTCATTCAAAAGGGTTTGGCTTTGTTCGTTTTACGGAATATGAAACCCAGGTGAAAGTAATGTCACAGCGACATATGATAGATGGACGATGGTGTGACTGTAAACTTCCAAATTCTAAGCAAAGCCCAGATGAGCCTTTGAGAAGCAGAAAGGTGTTTGTTGGGCGTTGTACGGAAGACATGACTGCTGATGAGTTGCGGCAGTTTTTTTGCCAGTACGGAGAAGTGGTAGATGTCTTCATTCCCAAACCGTTCAGGGCTTTTGCCTTTGTTACGTTTGCAGATGATCAGGTTGCCCAGTCTCTTTGTGGAGAGGACTTGATCATTAAAGGAATCAGCGTACATATATCCAATGCTGAACCTAAACACAATAGCAATAGACAGTTAGAAAGAAGTGGAAGATTTGGTGGTAATCCAGGTGGCTTTGGGAATCAGGGTGGATTTGGTAACAGTAGAGGGGGTGGAGCTGGTTTGGGAAACAATCAAGGTAGTAATATGGGCGGAGGGATGAACTTTGGTGCTTTTAGCATTAATCCAGCAATGATGGCTGCAGCCCAGGCAGCTCTGCAGAGCAGCTGGGGTATGATGGGCATGTTAGCCAGTCAGCAGAACCAGTCAGGCCCATCGGGTAATAACCAAAGCCAAGGCAACATGCAGAGGGAGCCAAATCAGGCTTTTGGTTCTGGAAATAACTCTTATACTGGTTCTAATTCAGGTGCAGCAATTGGTTGGGGATCAGCATCAAATGCAGGGTCAGGCAGTGGTTTTAATGGAGGCTTTGGCTCAAGCATGGATTCTAAATCTTCTGGCTGGGGAATGTAG

Related Sequences

bmy_20127T0 SequenceType object (3)

Length: 450 aa      View alignments
>bmy_20127T0
HFVGAKWSLGCSWIPRCFSVPVGLPSSGLAARQVKMSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQSQGNMQREPNQAFGSGNNSYTGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM*