Sequence details bmy_20136 (Coding sequence)

Part of scaffold_2346 (Scaffold)

For more information consult the page for scaffold_2346 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SNCAIP ENSTTRG00000009319 (Bottlenosed dolphin)

Gene Details

synuclein, alpha interacting protein

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008838, Bottlenosed dolphin)

Protein Percentage 90.4%
cDNA percentage 91.93%
Ka/Ks Ratio 0.44625 (Ka = 0.0514, Ks = 0.1152)

SNCAIP ENSBTAG00000021971 (Cow)

Gene Details

synphilin-1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000029292, Cow)

Protein Percentage 90.27%
cDNA percentage 89.54%
Ka/Ks Ratio 0.19017 (Ka = 0.0575, Ks = 0.3023)

SNCAIP  (Minke Whale)

Gene Details

synuclein, alpha interacting protein

External Links

Gene match (Identifier: BACU013022, Minke Whale)

Protein Percentage 91.59%
cDNA percentage 92.74%
Ka/Ks Ratio 0.49292 (Ka = 0.0622, Ks = 0.1261)

Additional orthologs identified in other species via the OPTIC pipeline.

SNCAIP (Human)   Sncaip (Mouse)  

Genome Location

Sequence Coding sequence

Length: 3003 bp    Location:146497..83622   Strand:-
Raw sequence 
>bmy_20136
ATGATGGAAGCCCCTGAATACCTTGATTTGGATGAAATTGACTTCAGTGATGACATCTCTGTAGAGTCTGGGATGCTGCCAGATCACCAAGCAGCCCATTTAGGTATTCAGTCACGTCACTCAAGACCATCCCGGAACTGTGCCGAAGATGTGATTCGCAAAACGAAGACAGATCAGTCCCCTCTTTTAATTTATTTTAAAACAGTTTCTAGCTCTAGCTGGAATTGTGGTGTCTCAACTCTTATTACAAACACACAGAAGCCCACGGGAATCGCCGATGTATACAGTAAGTTCCGCCCAGTGAAGCGAGTGTCCCCACTGAAACATCAGCCAGAGACTCTGGAGAACAATGAAAGTGATGACCAGAAGAACCAGAAGGCAGAGTACCAGAAAGGGGGTGATTCTGACCCAGGCCCCCAACCTGAGGAGCTCAGCCCCAGAGATGGAGAGAGCAGCCCTCCAAGTAAGAGCACGGAACCCAGCCCCTTGCTGGGCGAACTGGAGCATTATGACCTCGACATGGATGAGATTCTGGATGTGCCTTACATTAAATCCAGTCAGCAGCTTGCCTCTTTTACCAAGGTGACTTCAGAAAAAAGAATTTTGGGTTTATGCACAAGCATCAATGGCCTTTCTAGCAAAGCCTGCTCTACAGGAAATGCTGAGAACTCACCGTCCAGCATGACACCATTTTGTGTTCTCTCTCCTGTGAAAAGCCCTCACTTGAGAAAAGCATCCTCTGTCGTCCGTGACCAGCAGAAGCTCTCCACTGAAGAATCTGAGAGTTCTCCTCCTCTGGTTAAATGTGGCTCTGCATATGAGCCTGAAAACCAGAGTAAGGACTTCCCAAATAAGACCTTTAGTGATCCTCATGGTCGGAAAGTTGACAAGGCGATGCCAGACTGCCAGCTCAGGGCCTTCCATCTGCAGTCCTCAGCACCAGACCCCAAACTAGAGGAGCAGATCAGTGGCATGAACTGGACCAGCTCCCAAGGCCCAGAAGAAAGGAGTGAGTACCTGAAAAAAGTAAAAAGCATCTTGAACATCGTTAAAGAAGGGCAAATATCTCTCCTGCCACACCTAGCTGCCGACAATCTAGACAAAATTCATGATGAAAGCGGAAACAATCTCTTACACGTTGCCGCAGCGCAGGGACATGCAGAATGTCTGCAGCACCTCACGTCTTTGATGGGAGAAGATTGCCTCAACGAGCGAAATGTGGAGAAGTTGACTCCAGCGGGCCTGGCCATCAAGAATGGTCAATTGGAGTGCGTACGCTGGATGGTGAGTGAAACAGAAGCCATTGCTGAATTGAGTTGTTCTAAGGATTTTCCAAGCCTTATTCATTACGCAGGTTGCTTCGGCCAGGAAAAGATTCTGCTGTGGCTTCTTCAGTTCATGCAAGAGCAGGGCATCTCACTGGATGAAGTGGACCAGGAGGGCAACAGCGCCGTTCATGTGGCTTCCCAGCATGGCTACCTCGGGTGCATACAGAACCATGCGGGGGAAAAGCCCTCCCAGAGCGCTGAGCGCCACGGGCACACCCTGTGCTCCCGGTACCTGGTGGTGGTAGAGACCTGCATGTCGCTGGCCTCCCAGGTGGTGAAGCTAACCAAGCAGCTGAAGGAACAGACAATGCAACGTGTCACACTGCAGAACCAGCTCCAACAACTTCTAGAAGCCCAGAAATCAGAGGGCAAATCACTCCTTTCTTCGCCCAGTTCGCCATCCTCCCCAGCTTCCAGAAAGTCCCAATGGAAATCCCCAGATGCAGATGATGAGCCTATAGGCAAAAGCAAACCAGGAATCCAAGAGGGGATTCAAGTTCTTGGAAGCCTGTCCGCATCCAGCCGGGCTAGGGCCAAAGCTAAAGACGAAGATTCGGATAAAATCCTACGCCAGTTATTAGGAAAAGATATTTCAGAGAATGTCTGCACCCAGGAAAAGCTGTCCTTGGAATTCCAGGATGCTCAGGCTTCTTCTAGAAATTCAAAAAAGACCCCACTGGAGAAGAGGGAACTGAAGTTAGCCAGGCTGAAGCAGCTGATGCAGCGGTCACTGAGTGAGTCTGACACAGACTCCAATAACTCTGAGGAGGCCAAGGGCACGCCCGTGAGAAAGGCTGACAGGCCCAGACCACAGCCTGTCGTGGARAGCGTGGAGAGTATGGACAGCGCAGAGAGCTTACACTTGATGATAAAGAAACACAGCTTGGCATCGGGACGCAGGTTTCCTTTTAGCATCAAGGCCTCCAAATCTCTGGAGGGCCACAGCCCATCCCCCACCTCAGAGAGCAGCGAGCCAGACTTGGAATCCCAGGGTCCAGGCTCGGGAACCACTCCACCAAGCCAGCCCTCTGGAGAACCCCCTCAGCCCAGCCCTGACAGCACAGCTGCCCAGAAAGTGGCCATGAGTCCCAAGAGCGCCCTCAAGTCCCCATCTTCCAAGCGCCGGACATCGCAGAACCTGAAACTCAGAGTTACCTTTGAGGAGCCTGTGGTGCAGATGGAGCAAACTAGCCTTGAACTAAACGGAGAGAAGGACCGAGATAAGGGCAGGACCCTCCAGCGGACCTCCGCAAGCAGTGAACCAGGGGATCAACTGAAAAGGCCTTTTGGAACCTTCCGATCCATCATGGAGACGCTAAGTGGCAACCAGAACAATAATAATAACTATCAGGCATCCAACCAGCTGAAGACCTCCACCCTGCCCTTAACCTCACTTGGGAGGAAAACCACAGACGGTAAGGGAAATCCCGGGAGCTCTGCTAGCAAAGGAAAGAATAAGGCGGAGATGTACGACAGCTGCCTCAATCTTTCCTCTAACACGCTGATTGAAGAGCATCTGTGTGACTATGCACGGTACGTGGTGCTAGGGGTGTATTGCTCAGCAGTGCCATGCCTTCGCTGTGAATTGCATGATCTTTTACATGGCAATCCTGGAGCACCTTTCCCAGGGGCTGACACCAAGGAAGTAGAAAATTACAACTCTTTCCCCAAATAG

Related Sequences

bmy_20136T0 Protein

Length: 1001 aa      View alignments
>bmy_20136T0
MMEAPEYLDLDEIDFSDDISVESGMLPDHQAAHLGIQSRHSRPSRNCAEDVIRKTKTDQSPLLIYFKTVSSSSWNCGVSTLITNTQKPTGIADVYSKFRPVKRVSPLKHQPETLENNESDDQKNQKAEYQKGGDSDPGPQPEELSPRDGESSPPSKSTEPSPLLGELEHYDLDMDEILDVPYIKSSQQLASFTKVTSEKRILGLCTSINGLSSKACSTGNAENSPSSMTPFCVLSPVKSPHLRKASSVVRDQQKLSTEESESSPPLVKCGSAYEPENQSKDFPNKTFSDPHGRKVDKAMPDCQLRAFHLQSSAPDPKLEEQISGMNWTSSQGPEERSEYLKKVKSILNIVKEGQISLLPHLAADNLDKIHDESGNNLLHVAAAQGHAECLQHLTSLMGEDCLNERNVEKLTPAGLAIKNGQLECVRWMVSETEAIAELSCSKDFPSLIHYAGCFGQEKILLWLLQFMQEQGISLDEVDQEGNSAVHVASQHGYLGCIQNHAGEKPSQSAERHGHTLCSRYLVVVETCMSLASQVVKLTKQLKEQTMQRVTLQNQLQQLLEAQKSEGKSLLSSPSSPSSPASRKSQWKSPDADDEPIGKSKPGIQEGIQVLGSLSASSRARAKAKDEDSDKILRQLLGKDISENVCTQEKLSLEFQDAQASSRNSKKTPLEKRELKLARLKQLMQRSLSESDTDSNNSEEAKGTPVRKADRPRPQPVVESVESMDSAESLHLMIKKHSLASGRRFPFSIKASKSLEGHSPSPTSESSEPDLESQGPGSGTTPPSQPSGEPPQPSPDSTAAQKVAMSPKSALKSPSSKRRTSQNLKLRVTFEEPVVQMEQTSLELNGEKDRDKGRTLQRTSASSEPGDQLKRPFGTFRSIMETLSGNQNNNNNYQASNQLKTSTLPLTSLGRKTTDGKGNPGSSASKGKNKAEMYDSCLNLSSNTLIEEHLCDYARYVVLGVYCSAVPCLRCELHDLLHGNPGAPFPGADTKEVENYNSFPK*