Sequence detailsbmy_20147 (Coding sequence)

Part of scaffold_2355 (SequenceType object (1))

For more information consult the page for scaffold_2355 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PLA2G2CENSTTRG00000017073 (Bottlenosed dolphin)

Gene Details

phospholipase A2, group IIC

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000016186, Bottlenosed dolphin)

Protein Percentage 73.94%
cDNA percentage 83.8%
Ka/Ks Ratio 0.5376 (Ka = 0.1682, Ks = 0.3128)

PLA2G2CENSBTAG00000016877 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000022450, Cow)

Protein Percentage 70.55%
cDNA percentage 79.68%
Ka/Ks Ratio 0.25804 (Ka = 0.1839, Ks = 0.7129)

PLA2G2C (Minke Whale)

Gene Details

phospholipase A2, group IIC

External Links

Gene match (Identifier: BACU005726, Minke Whale)

Protein Percentage 81.36%
cDNA percentage 84.75%
Ka/Ks Ratio 0.28537 (Ka = 0.129, Ks = 0.4519)

Additional orthologs identified in other species via the OPTIC pipeline.

PLA2G2C (Human)   Pla2g2c (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 441 bp    Location:184487..197503   Strand:+
Raw sequence 
>bmy_20147
ATGAAGGTCTTTGGGGTTCTCGTGGTCTTTGTCTCCTGCCTGATGGCCCCCACCCATGGCAGCTTCTGGCAGTTTCAAAGGATGGTCAAACACATCACAGGGCGGAGCGCCTTCTTCCCAAATTATGGATACGGCTGCTACTGCGGGCTTGGGGGCATCGGGACCCCCGTGGATGACACTGACAGCTGCTGCCTGGCCCACGACTGCTGCTACGAGAAACTGAAGTGGCTCAGCTGCCAGCCCGTGTTGAACGGCTACCAGTTCCACGTGGCCAACGGGACCGTGATCTTTGAATGTGCCCTTGGTCCTGGTGTTGGCTGCCTCCGTGGGCTAAGGGCCTGCGAGTGTGACACGCAATCTGCTTCAAAGAGAACCTGCCCAAACTTCAAGCAGTTCTTCTCCAGCTGGCCCCGCTGCGGCAGGCGCAAACTCCAATGCTAG

Related Sequences

bmy_20147T0 SequenceType object (3)

Length: 147 aa      View alignments
>bmy_20147T0
MKVFGVLVVFVSCLMAPTHGSFWQFQRMVKHITGRSAFFPNYGYGCYCGLGGIGTPVDDTDSCCLAHDCCYEKLKWLSCQPVLNGYQFHVANGTVIFECALGPGVGCLRGLRACECDTQSASKRTCPNFKQFFSSWPRCGRRKLQC*