Part of scaffold_2390 (Scaffold)

For more information consult the page for scaffold_2390 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LRRC1 ENSTTRG00000000742 (Bottlenosed dolphin)

Gene Details

leucine rich repeat containing 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000000699, Bottlenosed dolphin)

Protein Percentage 86.56%
cDNA percentage 86.48%
Ka/Ks Ratio 0.32403 (Ka = 0.0437, Ks = 0.1347)

LRRC1 ENSBTAG00000017533 (Cow)

Gene Details

leucine-rich repeat-containing protein 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000023310, Cow)

Protein Percentage 84.98%
cDNA percentage 83.49%
Ka/Ks Ratio 0.25708 (Ka = 0.1148, Ks = 0.4466)

LRRC1  (Minke Whale)

Gene Details

leucine rich repeat containing 1

External Links

Gene match (Identifier: BACU012243, Minke Whale)

Protein Percentage 87.56%
cDNA percentage 89.51%
Ka/Ks Ratio 0.66834 (Ka = 0.1015, Ks = 0.1519)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1497 bp    Location:150326..181769   Strand:+
>bmy_20222
ATGAAACCGGCTTTGTCAGTGCCCGCGATTCTGGCTTTGATGTTGGAAGGAGTACAGAGGATTAAGGCAGATGAGAGAGTTGGGATGATGTCTGACTCCCCGTGTTCTGTGCGCTCACACGTCAATGCCCTCCACATCTGGTCGTTACTCTGTCTTTATAACCTGGCTTCACTGGAACTGAGAGAGAATCTTCTTACGTATCTCCCTGACTCTCTAACCCAGCTACGGAGACTAGAAGAACTTGATTTAGGAAACAATGAAATATATAATTTGCCAGAATCGATTGGCGCTCTCTTACATCTAAAGGATCTCTGGTTGGATGGAAATCAACTGTCAGAATTACCTCAGGAAATAGGAAATCTGAAGAACCTGCTCTGCTTAGATGTCTCTGAAAACAGGTTGGAAAGACTTCCCGAAGAAATCAGTGGCCTGACTTCGTTRACGGATTTAGTCATTTCCCAGAACTTGTTAGAAACACTCCCAGATGGCATTGGAAAACTAAAGAAACTGTCGATCTTGAAGGTGGATCAGAACAGACTCACCCAGTTGCCCGAGGCGGTTGGGGACTGTGAAAGCCTCACGGAATTGGTTCTTACGGAAAACCGGCTCCTGACTTTACCTAAGAGCATTGGAAAACTTAAGAAGCTGAGCAACTTGAATGCAGACAGAAATAAATTAGTGTCTTTACCAAAAGAGATCGGCGGGTGCAGCAGCCTCACTGTGTTCTGCGTGCGCGACAACAGGCTGACTCGGATCCCTGCGGAGGTGTCACGGGCCGCTGAGCTGCACGTCCTGGACGTGGCAGGGAACAGGAAGCGGTTTTTATTTTTTTTTCCTCTTTCGTTTTGGACAAGACTTGATTTAATCACAGATTGTAAGCTCCCCATGTCTCCTTTTGTTTTCATCGAGGCTTTGAAGGCTCTGTGGTTATCAGACAACCAGTCCCAGCCGCTGCTCACGTTCCAGACAGACACTGACCACACCACCGGGGAGAAGGTTCTCACCTGTGTCTTACTTCCTCAGCTGCCTTCTGAACCTGCCTGCCAAGAGAACCTGCCTCGCTGTGGTGCCCTGGAGAGCTTGGTGAATGATGTGTCCGATGAGGCCTGGAATGAGCGGGCAGTGAACAGAGTCAGCGCAATCCGATTTCTGGAAGATGAAAAGGATGAGGACGATAATGAAACGAGAACACTCCTGAGACGAGCCACGCCCCACCCAGGCGAGCTCAAGAACATGAAAAAGACGGTGGAAAATTTACGGAATGACAGGAACGCTGCTAAAGGACTGGATTCCAACAAAAACGAGGTCAACCACACCATTGACCGCGTGACCACGTCGTTGTTTAATACACTACTGACAACATCTGACCTTTGTTTTTGTCTTGTGTTGGGGTCAGGGAGAGCAGGAAGGGGAATTTTGATCCTCTTCCCTCCCATGAAGTGCTGGGACATTGTGAACCCAAGTTCTCTTGGACCTACTGATGAGAGAGAGTTTTAT

Related Sequences

bmy_20222T0 Protein

Length: 499 aa      View alignments
>bmy_20222T0
MKPALSVPAILALMLEGVQRIKADERVGMMSDSPCSVRSHVNALHIWSLLCLYNLASLELRENLLTYLPDSLTQLRRLEELDLGNNEIYNLPESIGALLHLKDLWLDGNQLSELPQEIGNLKNLLCLDVSENRLERLPEEISGLTSLTDLVISQNLLETLPDGIGKLKKLSILKVDQNRLTQLPEAVGDCESLTELVLTENRLLTLPKSIGKLKKLSNLNADRNKLVSLPKEIGGCSSLTVFCVRDNRLTRIPAEVSRAAELHVLDVAGNRKRFLFFFPLSFWTRLDLITDCKLPMSPFVFIEALKALWLSDNQSQPLLTFQTDTDHTTGEKVLTCVLLPQLPSEPACQENLPRCGALESLVNDVSDEAWNERAVNRVSAIRFLEDEKDEDDNETRTLLRRATPHPGELKNMKKTVENLRNDRNAAKGLDSNKNEVNHTIDRVTTSLFNTLLTTSDLCFCLVLGSGRAGRGILILFPPMKCWDIVNPSSLGPTDEREFY