Part of scaffold_2391 (Scaffold)

For more information consult the page for scaffold_2391 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CDH17 ENSTTRG00000012477 (Bottlenosed dolphin)

Gene Details

cadherin 17, LI cadherin (liver-intestine)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011842, Bottlenosed dolphin)

Protein Percentage 84.24%
cDNA percentage 87.51%
Ka/Ks Ratio 0.61665 (Ka = 0.0637, Ks = 0.1033)

CDH17 ENSBTAG00000021964 (Cow)

Gene Details

cadherin-17 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000043215, Cow)

Protein Percentage 84.37%
cDNA percentage 88.67%
Ka/Ks Ratio 0.44718 (Ka = 0.0956, Ks = 0.2139)

CDH17  (Minke Whale)

Gene Details

cadherin 17, LI cadherin (liver-intestine)

External Links

Gene match (Identifier: BACU000489, Minke Whale)

Protein Percentage 93.8%
cDNA percentage 95.91%
Ka/Ks Ratio 0.88654 (Ka = 0.0414, Ks = 0.0466)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2325 bp    Location:131600..180526   Strand:+
>bmy_20232
ATGAAAACGTTACTTGAAATTGGTGACTTACTACAAATTCTACAACATTGTTTTTCCTTACAACCTAATCTAATGTTTGCTTTTTCCCAGTTTAAGGCCAGTCCTCTTGCTGTGACTTTCAAACTAACTGGGGAGACAGATGACATATTTCAGATACAACCAGATGGACTTCTGTATCACAACAAAGCCCTGGACAGGGAAACAAGAGCTGTTCACAAACTCCAGGTCTCAGCCCTGGATGCTCATGGCAATACAGTGGAGGGCCCAGTCCCCATCACCATAGAAGTGAAGGACATCAACGACAATCGACCTGTGTTTCTCCAGCCAAAGTATGAAGGCTCAGTAAGGCAGAATTCTCGCCCAGGAAAGCCCTTTATGTATGTCAACGCTACAGACTTGGATGATCCAGCCACACCCAATGGCCAGCTTATTTATCAAATTATCATGCAGCTTCCCAAGGTCAACAATGTCATGTACTTTCAGATCAACAACAAAACGGGGGCAATTTCACTTACTCGAGAAGGATCCCAGGAACTGGATCCTTTGAAGAATCCTTTCTACAATCTGGTGGTCTCAGTGGAGGACATGGGAGGCCAGAAGGAGCATTCCTTTAGTGACAGCACATCTGTGGATATTACGGTGAAGGAGAATATTTGGAAAGCACCAGAACCAGTGGAGATTGAAGAAAACTCAACTAATCCTTACCCCATTAAAATCACTCAGGTGCAGTGGAACGATCCAGGGGCACTATATTCTTTAGTGGACAAGGAGAAGCCATCAAAATTCCCATTTTTAATCGACCAGGAAGGAGATATCTATGTGACTCAGCCCTTGGACCGAGAAGAAAAGGACGCATATGTTTTTTATGCGGTTGCAAAGGATGAGCATGGAAAACCACTCGCATTTCCACTGCAAATTCAAGTGAAAGTTAAAGACATTAATGATAATCCACCTACATGTCCATCTACAGTGACTGTACTTGAGGTCCAGGAGAATGAACAAATAGGGAGCAGTATTGGAACACTTATTGCTCATGACATGGATGAAGAAAACACTGTCAACAGTGTTTTAAGATACAGAATTGTGGATCAAACCCCCAAAGTGCCTAGAGATGGACTCTTCCTGGTCCAAACCTACTTGGGAACGTTCCAGTTAGCTGTGCAGTCTTTGCGGAAGCGAGACACTCCGCAGTACAATTTGACAGTAGAGGTGTCTGACAAAGATTTCAAGACCCTCTGCTTTGTGCAGATCAACATTATTGATATCAATGATCAGATCCCCATCTTTGAAAAACCAGATTATGGAAACCTAACTCTCCCTGAAGATACAGCCATTGGAACTGTCATCTTAACCATCCAGGCCACCGATGACGATGAACCACATACGGGAAGTTCTAAAATCCTGTACCGAATTACACAGGGAGACAGTGAGGGACGTTTGGAGATTGAAACAGATCCCGAAACCAATACTGGATATGTCAAGGTTAAAAAGCCTCTTGATTTTGAAGCAGTAGCCGTTCACAATATTGTGTTCCAAGCAGAAAATCCTGAGCCTCTGGTGCCTGGTGTACAGTACAATGCCAGCTCTTCTGCTACATTCAGACTTATTGTGACAGATGTGAATGAAGCACCACAATTTTCCCAACAAGTATACCAAGCAAAAGTCAGTGAGGATGTGGCTAAAGGCACTAAAGTGGGCAACGTGACTGCCAAGGATCCGGAAGGTCTGGACATAAGTTATTCATTAAGAGGTGACAAGAGAGGTTGGCTAAAAATTGACCCCGTCACCGGCGAGATCTTTAGTGTGGCTCCGCTGGACAGGGAAGCTGAAAGTCTGTATCGGGTACAAGTGGTGGCAACAGAAGTAGGTGGATCCTCCTTAAGCTCCACGGCGCAATTGCACCTGACCCTCATGGATGTGAACGACAACCCGCCGCGGCTGGCCAAGGAGTACACAGGCTTGTTCTTCTGCTATCCCCCTAAAGCACCTGAAAGTCTCATTTTCGAGGCCACTGATGATGATCAGCAGTCATTTCGGGGTCGACACTTTACATTTTCCCTTGGCAGTGAAAGCTTACAAAAAGACTGGGAAGTTTCCAAAATCAATGGAACTCATGCCAGGCTCTCCACCAAGCACACGGACTTTGAGGAGAGAGTTTACCACATCCCAGTCCGCATCAATGATGGTGGTCGGCCACCCTTGGAAGGGACTGTCTCTTTACCAGGTATAATTTTAGCAGTTGTGTTTTTCCAGATAAAGAAGAATAAAGGCCAACGTAATGTTGGAAGTGCTCAGGCATCTGAAGTCAAGCCTCTGAGAAACTGA

Related Sequences

bmy_20232T0 Protein

Length: 775 aa      View alignments
>bmy_20232T0
MKTLLEIGDLLQILQHCFSLQPNLMFAFSQFKASPLAVTFKLTGETDDIFQIQPDGLLYHNKALDRETRAVHKLQVSALDAHGNTVEGPVPITIEVKDINDNRPVFLQPKYEGSVRQNSRPGKPFMYVNATDLDDPATPNGQLIYQIIMQLPKVNNVMYFQINNKTGAISLTREGSQELDPLKNPFYNLVVSVEDMGGQKEHSFSDSTSVDITVKENIWKAPEPVEIEENSTNPYPIKITQVQWNDPGALYSLVDKEKPSKFPFLIDQEGDIYVTQPLDREEKDAYVFYAVAKDEHGKPLAFPLQIQVKVKDINDNPPTCPSTVTVLEVQENEQIGSSIGTLIAHDMDEENTVNSVLRYRIVDQTPKVPRDGLFLVQTYLGTFQLAVQSLRKRDTPQYNLTVEVSDKDFKTLCFVQINIIDINDQIPIFEKPDYGNLTLPEDTAIGTVILTIQATDDDEPHTGSSKILYRITQGDSEGRLEIETDPETNTGYVKVKKPLDFEAVAVHNIVFQAENPEPLVPGVQYNASSSATFRLIVTDVNEAPQFSQQVYQAKVSEDVAKGTKVGNVTAKDPEGLDISYSLRGDKRGWLKIDPVTGEIFSVAPLDREAESLYRVQVVATEVGGSSLSSTAQLHLTLMDVNDNPPRLAKEYTGLFFCYPPKAPESLIFEATDDDQQSFRGRHFTFSLGSESLQKDWEVSKINGTHARLSTKHTDFEERVYHIPVRINDGGRPPLEGTVSLPGIILAVVFFQIKKNKGQRNVGSAQASEVKPLRN*