Sequence detailsbmy_20320 (Coding sequence)

Part of scaffold_2398 (SequenceType object (1))

For more information consult the page for scaffold_2398 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

KDM5CENSTTRG00000005129 (Bottlenosed dolphin)

Gene Details

lysine (K)-specific demethylase 5C

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000004859, Bottlenosed dolphin)

Protein Percentage 98.38%
cDNA percentage 98.4%
Ka/Ks Ratio 0.30106 (Ka = 0.0106, Ks = 0.0353)

SMCXENSBTAG00000014943 (Cow)

Gene Details

lysine-specific demethylase 5C

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000019893, Cow)

Protein Percentage 97.01%
cDNA percentage 95.72%
Ka/Ks Ratio 0.13352 (Ka = 0.0173, Ks = 0.1296)

Additional orthologs identified in other species via the OPTIC pipeline.

KDM5C (Human)   Kdm5c (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 4809 bp    Location:113675..144911   Strand:+
Raw sequence 
>bmy_20320
ATGGAGCCGGGGTCTGACGACTTCCTACCGCCGCCGGAGTGCCCGGTGTTCGAGCCTAGCTGGGCGGAGTTCCGAGACCCTCTCGGCTACATTGCGAAAATCAGGCCCATCGCCGAGAAGTCGGGCATTTGCAAGATCCGCCCACCCGCGATTAGGCCAGAAGATAGGGGTCAGGTAGAGGGGGAGGCCAGCCTCTCTGAGCCATTTTTTCTCCAGGCCCAGACGAGAGTGAAACTGAACTACTTGGATCAGATTGCCAAATTCTGGGAAATCCAGGGCTCCTCCTTAAAGATTCCCAATGTAGAACGGCGGATCTTGGACCTCTACAGCCTCAGCAAAATCGTGGTGGAGGAAGGTGGCTACGAAGCCATCTGCAAGGACCGTCGATGGGCTCGGGTGGCCCAGCGCCTCAACTACCCACCAGGCAAAAACATTGGCTCCCTGCTACGCTCCCACTATGAACGCATCGTTTACCCCTATGAGATGTACCAGTCTGGAGCCAACCTGGTGCAGTGCAACACACGTCCATTTGATAATGAGGAGAAGGACAAGGAATACAAACCCCACAGTATCCCCCTTCGACAGTCTGTGCAGCCCTCCAAGTTCAACAGCTATGGCCGGCGAGCCAAGAGACTGCAGCCTGATCCGGAACCCACAGAGGAAGACATTGAAAAGAATCCTGAGCTGAAGAAGCTTCAGATCTATGGGGCAGGCCCCAAGATGATGGGCCTGGGCCTCATGGCCAAGGATAAGACTCTGCGGAAAAAAGATAAGGAAGGGCCCGAGTGCCCCCCGACCATAGTGGTGAAGGAGGAGTCAGGTGGGGACGTGAAGGTGGAGTCACCCTCACCCAAGACCTTCCTGGAGAGCAAGGAGGAGCTGAGTCACAGCCCAGAGCCCTGCACCAAGATGACCATGAGGCTGCGGAGGAACCACAGCAATGCCCAGTTTATTGAGTCATATGTATGCCGAATGTGTTCCCGAGGGGATGAGGATGACAAGCTCCTGCTGTGTGATGGCTGTGATGACAACTACCACATCTTCTGCTTGCTGCCTCCTTTGCCTGAGATTCCCAAGGGTGTCTGGCGGTGCCCAAAGTGTGTCATGGCGGAGTGTAAGCGCCCCCCCGAAGCCTTTGGCTTTGAGCAGGCTACCCGGGAATACACTCTGCAGAGCTTTGGCGAGATGGCTGACTCCTTTAAAGCCGATTACTTCAACATGCCCGTACACATGGTGCCCACAGAACTTGTGGAGAAGGAATTCTGGCGGCTGGTGAATAGCATTGAGGAAGATGTGACTGTTGAGTATGGGGCTGACATCCATTCCAAAGAATTTGGTAGCGGTTTCCCCGAGTATGCTACTAGTGGTTGGAACCTGAATGTGATGCCGGTGTTGGAGCAGTCCGTACTGTGCCACATCAATGCAGATATCTCCGGCATGAAGGTGCCCTGGCTCTATGTGGGCATGGTCTTCTCAGCCTTTTGCTGGCATATTGAGGATCACTGGAGTTACTCCATTAACTACCTCCACTGGGGTGAGCCGAAGACCTGGTATGGGGTACCCTCACTTGCAGCAGAACATTTGGAAGAGGTGATGAAGAAGCTGACACCTGAGCTCTTTGATAGCCAGCCTGACCTTCTGCACCAACTTGTCACCCTCATGAATCCCAACACCCTCATGTCCCATGGTGTGCCGGTTGTCCGCACAAACCAGTGTGCAGGAGAATTTGTCATTACCTTCCCTCGTGCTTACCACAGTGGCTTTAACCAAGGCTACAACTTTGCTGAGGCTGTCAACTTTTGCACTGCTGACTGGCTGCCGGCTGGGCGCCAGTGCATTGAGCACTACCGCCGGCTCCGAAGATACTGTGTCTTCTCCCATGAGGAACTCATCTGCAAGATGGCTGCCTGTCCAGAGAAGCTGGACCTGAACCTGGCAGCAGCTGTGCACAAGGAGATGTTCATCATGGTGCAGGAGGAGCGGCGTCTACGAAAGGCCCTGCTAGAGAAGGGCATCACGGAAGCTGAGCGAGAGGCTTTTGAGCTGCTCCCGGATGATGAGCGTCAGTGCATCAAGTGCAAGACCACGTGCTTTCTATCAGCCCTAGCCTGCTATGACTGCCCAGACGGCCTTGTCTGCCTTTCCCACATCAATGACCTCTGCAAGTGCTCCAGTAGCCGGCAGTACCTGCGATATCGGTACACCTTGGATGAGCTCCCTGCCATGCTCCATAAGCTGAAGGTCCGGGCTGAGTCCTTTGACACCTGGGCCAACAAAGTGCGAGTGGCCCTGGAGGTGGAGGATGGGCGGAAGCGCAGCCTTGAAGAGCTGAGGGCACTAGAGTCTGAGGCCCGTGAGCGGAGATTTCCTAACAGTGAGCTGCTGCAGCGACTGAAGAACTGCCTGAGCGAGGCAGAGGCTTGCGTGTCCCGGGCTCTGGGGCTGGTCAGCGGCCAGGAAGCTGGCCCCTACAGGGTGGCTGGTCTACAGATGACCCTGGCTGAGCTCCGGGCCTTTCTGGACCAGATGAACAACCTGCCTTGTGCCATGCACCAGATTGGGGATGTCAAGGGTATTCTGGAACAGGTGGAAGCCTACCAGGTTGAAGCCCGTGAGGCCCTGGCCTCATTGCCCTCCAGTCCGGGGCTCCTGCAGTCCCTGCTGGAGAGAGGGCGGCAGCTGGGGGTGGAGGTACCTGAGGCCCAGCAGCTCCAGCGGCAGGTGGAACAGGCGCGATGGCTGGATGAGATGAAACGCACACTGGCCCCCTCAGCCCGAAGGGGCACCCTGGCTGTCATGCGGGGACTGTTGGTCGCGGGTGCCAGTGTAGCCCCTAGCCCTGCTGTGGACAAGGCCCGAGCTGAACTGCAGGAGCTACTGACCATCGCTGAACGCTGGGAGGAGAAGGCCCATCTCTGCCTGGAGGCCAGGCAGAAGCATCCACCAGCCACGCTTGAGGCCATAATTCATGAGGCAGAAAACATCCCTGTTCACCTGCCCAACATCCAGGCTCTCAAGGAGGCTCTTGCTAAGGCCCGGGCCTGGATTGCTGATGTGGACGAGATCCAAAATGGTGATCACTACCCCTGCCTGGATGACTTGGAGGGCCTGGTGGCTGTTGGCCGGGACCTACCTGTGGGGTTGGAGGAGCTGAGACAGCTAGAGCTGCAGGTACTGACGGCGCACTCCTGGAGGGAGAAGGCTTCCAAGACCTTTCTCAAGAAGAATTCTTGCTACACTCTGCTGGAGGTGCTCTGCCCGTGTGCAGACGCCGGCTCAGACAGCACCAAGCGCAGCCGGTGGATGGAGAAGGAGCTGGGGTTGTACAAATCTGACACAGAGTTGCTGGGGCTGTCTGCGCAGGACCTCAGGGACCCAGGCTCTGTGGTAAGGAGCTTGGGCCCAGATGGGGAGAAGAGCCTGGTGACGACAGTGTCTGAGCCAGGTGGCCATGAGCAGACCACTTGCTCCCTGGGCCTTAGTTCTCCTGGTTTGGGAGTGGGGTATTCATGGTGCCAGAGAAGGAGGGTTGGGGTGCTGACCTCTCCTCCCCTGTCCTGGGCACGGCAGATCGTGGCCTTCAAGGAGGGGGAACAGAAGGAGAAGGAGGGAATTCTGCAGCTGCGTCGCACCAACTCCGCCAAGCCCAGTCCACTGGCATCATCGACCACAGCTTCCTCTGCATCCTCCATCTGTGTGTGTGGGCAGGTGCCAGCCGGGGTGGGAGCTCTACAGTGTGACCTGTGTCAGGACTGGTTCCATGGGCGATGTGTGTCGGTACCCCGCCTCCTCAGTTCCCCAAGGCCCAGTCCCACCTCATCCCCACTGCTGGCCTGGTGGGAGTGGGACACCAAATTCTTGTGTCCGCTGTGCATGCGCTCACGGCGCCCACGCCTGGAGACCATCCTGGCACTGCTGGTAGCGCTGCAGAGACTGCCTGTGCGGCTGCCTGAGGGTGAGGCCCTGCAGTGCCTCACAGAGAGGGCCATCAGCTGGCAAGGCCGTGCCAGGCAGGCTCTGGCCTCTGAGGATGTGACTGCTCTGTTGGGACGGCTGGCCGAGCTTCGCCAGCGGCTGCAGGCTGAACCCAGGCCCGAGGAGCCCCCTACCTACCCTTCAGCCCCTGCCTCTGACCCTCTCAGAGAAGGCAGTGGCAAGGATATGCCTAAGGTGCAGGGGTTGCTGGAGAATGGAGACAGCATGACCAGTCCTGAGAAGGTAGCCCCAGGGGAGGGCTCAGGTAAGAGAGACCTGGAGCTGCTGTCCTCGCTGTTGCCACAGTTGACTGGCCCTGTGTTGGAGCTGCCTGAGGCAACCCGGGCCCCCCTGGAGGAGCTCATGTTGGAGGGGGATCTGCTTGAGGTGACCCTGGATGAGAACCACAGCATCTGGCAGCTGCTGCAGGCTGGGCAGCCTCCAAACCTGGAGCGGATCCGCACACTTCTGGAGCTGGAGAAGGCAGAGCGCCATGGGAGCCGAGCACGGGGCCGGGCGCTGGAGAGGCGGCGGCGGCGGAAGGTGGATCGGGGTGGGGAGGGCGATGACCCAGCCCGAGAGGAGCTAGAGCCAAAGAGGGTACGGAGCTCAGGGCCAGAGGCCGAGGAGGCCCAGGAGGAGGAGGAGCTGGAGGAGGAGACTGGGGGTGAGGGCCCACCCCTGCCCACCACTGACAGCCCCGGCACCCAGGAGAACCAGAATGGCTTGGAGCCGGCGCTAGGGGCCAGTTCAGGCTCCTCGGCCCCTTTCTCCACTTTGACTCCCCGGCTGCACGTGCCCTGCCCGCAGCAGCCGCCTCAGCAACAGTTGTGA

Related Sequences

bmy_20320T0 SequenceType object (3)

Length: 1603 aa      View alignments
>bmy_20320T0
MEPGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPAIRPEDRGQVEGEASLSEPFFLQAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMYQSGANLVQCNTRPFDNEEKDKEYKPHSIPLRQSVQPSKFNSYGRRAKRLQPDPEPTEEDIEKNPELKKLQIYGAGPKMMGLGLMAKDKTLRKKDKEGPECPPTIVVKEESGGDVKVESPSPKTFLESKEELSHSPEPCTKMTMRLRRNHSNAQFIESYVCRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMAECKRPPEAFGFEQATREYTLQSFGEMADSFKADYFNMPVHMVPTELVEKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPEYATSGWNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAACPEKLDLNLAAAVHKEMFIMVQEERRLRKALLEKGITEAEREAFELLPDDERQCIKCKTTCFLSALACYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDELPAMLHKLKVRAESFDTWANKVRVALEVEDGRKRSLEELRALESEARERRFPNSELLQRLKNCLSEAEACVSRALGLVSGQEAGPYRVAGLQMTLAELRAFLDQMNNLPCAMHQIGDVKGILEQVEAYQVEAREALASLPSSPGLLQSLLERGRQLGVEVPEAQQLQRQVEQARWLDEMKRTLAPSARRGTLAVMRGLLVAGASVAPSPAVDKARAELQELLTIAERWEEKAHLCLEARQKHPPATLEAIIHEAENIPVHLPNIQALKEALAKARAWIADVDEIQNGDHYPCLDDLEGLVAVGRDLPVGLEELRQLELQVLTAHSWREKASKTFLKKNSCYTLLEVLCPCADAGSDSTKRSRWMEKELGLYKSDTELLGLSAQDLRDPGSVVRSLGPDGEKSLVTTVSEPGGHEQTTCSLGLSSPGLGVGYSWCQRRRVGVLTSPPLSWARQIVAFKEGEQKEKEGILQLRRTNSAKPSPLASSTTASSASSICVCGQVPAGVGALQCDLCQDWFHGRCVSVPRLLSSPRPSPTSSPLLAWWEWDTKFLCPLCMRSRRPRLETILALLVALQRLPVRLPEGEALQCLTERAISWQGRARQALASEDVTALLGRLAELRQRLQAEPRPEEPPTYPSAPASDPLREGSGKDMPKVQGLLENGDSMTSPEKVAPGEGSGKRDLELLSSLLPQLTGPVLELPEATRAPLEELMLEGDLLEVTLDENHSIWQLLQAGQPPNLERIRTLLELEKAERHGSRARGRALERRRRRKVDRGGEGDDPAREELEPKRVRSSGPEAEEAQEEEELEEETGGEGPPLPTTDSPGTQENQNGLEPALGASSGSSAPFSTLTPRLHVPCPQQPPQQQL*