Sequence details bmy_20500 (Coding sequence)

Part of scaffold_2499 (Scaffold)

For more information consult the page for scaffold_2499 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SMARCA1 ENSTTRG00000006168 (Bottlenosed dolphin)

Gene Details

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000005834, Bottlenosed dolphin)

Protein Percentage 96.81%
cDNA percentage 96.73%
Ka/Ks Ratio 0.18294 (Ka = 0.0038, Ks = 0.0207)

SMARCA1 ENSBTAG00000002292 (Cow)

Gene Details

probable global transcription activator SNF2L1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000002973, Cow)

Protein Percentage 98.52%
cDNA percentage 96.55%
Ka/Ks Ratio 0.05295 (Ka = 0.0067, Ks = 0.1271)

Additional orthologs identified in other species via the OPTIC pipeline.

SMARCA1 (Human)   Smarca1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 2838 bp    Location:185777..130875   Strand:-
Raw sequence 
>bmy_20500
ATGGAGCCGGACACCGCCGCAGTGGCAGCCACCGTGGCAGCCTCTGATGCGACCGCCACGATCGTGGTCATAGAGGACGAGCAGCCGGGGCCGTCCACCTCTAAGGAGGAGGGAGCGGCCGCCGCGGCCACCGAAGCCACCGTGGCCAAGGAGAAGGGCGAGAAGAAGAAGGAGAAAAACCTTTCTCCATTTCAACTCAAACTTGCTGCTAAAGCTTCTAAATCTGAAAAGGAAATGGATCCAGAATATGAAGAGAAAATGAAAGCAGATCGAGCAAAGAGATTTGAATTTTTACTGAAGCAGACAGAACTTTTTGCACATTTCATTCAACCTTCAGCACAGAAATCTCCAACATCTCCTCTGAACATGAAATTGGGACGCCCTCGAATAAAGAAAGATGACAAGCAGAGCTTAATTTCTGTTGGAGACTACCGTCACAGGCGCACAGAACAAGAAGAAGATGAAGAGCTGCTCTCGGAGAGTCGGAAAACATCTAACGTGTGTGTTAGATTTGAGGTGTCACCTTCATATGTGAAAGGAGGACCACTGAGAGATTATCAGATTCGAGGACTGAACTGGTTGATCTCTTTGTATGAAAATGGAGTCAATGGTATTTTGGCTGATGAAATGGGTCTTGGTAAGACTTTACAGACAATTGCTTTGCTTGGTTACCTGAAACATTACCGAAACATTCCTGGACCTCACATGGTTTTAGTTCCAAAGTCGACTTTACACAACTGGATGAATGAATTTAAGCGATGGGTCCCATCTCTTCGTGTTATTTGTTTCGTTGGAGACAAGGATGCGAGACTTTCAGAGATTGTTCGTGAGTTCAAGTCAACTAACCGCTTGCTCCTAACTGGAACACCTTTGCAGAATAACCTGCATGAACTCTGGGCACTACTCAACTTTTTATTGCCTGATGTCTTTAATTCTGCAGATGACTTTGATTCTTGGTTTGACACTAAAAATTGTCTTGGTGATCAAAAACTTGTGGAAAGACTTCACGCAGTTTTAAAACCATTTTTGTTACGACGTATAAAAACTGATGTAGAGAAGAGCCTGCCTCCTAAAAAGGAAATCAAGATTTACTTGGGATTGAGTAAAATGCAGCGAGAATGGTATACAAAAATCCTGATGAAAGATATTGATGTTCTAAACTCTGCTGGCAAAATGGACAAGATGCGGCTCTTAAACATTCTGATGCAGCTTCGRAAGTGTTGTAATCATCCTTACCTGTTTGATGGTGCTGAACCTGGTCCACCGTATACCACTGATGAGCACATTGTTAGCAACAGTGGTAAAATGGTAGTTCTTGATAAACTGTTGGCCAAACTCAAAGAACAGGGTTCAAGGGTTCTCATTTTTAGCCAGATGACTCGCTTGCTGGACATTTTGGAGGATTATTGTATGTGGCGTGGTTACGAGTATTGTCGACTGGATGGACAAACCCCACATGAAGAAAGAGAGGAAGCAATAGAGGCCTTTAATGTTCCTAACAGTAGCAAATTCATCTTTATGCTGAGTACCAGGGCTGGAGGTCTTGGAATTAACTTGGCAAGTGCTGATGTGGTTATACTATATGACTCAGACTGGAATCCACAGGTTGATCTACAAGCTATGGATCGGGCACATCGTATCGGTCAGAAGAAGCCAGTACGTGTATTTCGTCTCATCACCGACAACACCGTTGAAGAAAGGATTGTTGAAAGAGCTGAGATAAAACTGAGACTTGACTCAATTGTCATACAACAAGGAAGACTTATTGACCAGCAGTCTAACAAGATGGCAAAAGAGGAAATGTTACAAATGATACGTCATGGAGCCACCCATGTTTTTGCTTCTAAAGAAAGTGAGCTGACAGATGAAGACATTACAACTCTTCTGGAAAGAGGGGAAAAGAAGACTGCAGAGATGAATGAACGCTTGCAGAAAATGGGAGAGTCTTCTCTGAGAAATTTTAGAATGGACACTGAACAAAGTTTGTACAAGTTTGAAGGAGAAGATTATAGAGAAAAACAGAAGCTTGGAATGGTGGAATGGATTGAACCTCCCAAACGAGAACGCAAAGCCAACTATGCGGTGGATGCCTACTTCAGAGAGGCTTTACGTGTTAGTGAGCCAAAGATTCCAAAGGCTCCACGACCTCCAAAACAGCCAAATGTTCAGGATTTTCAGTTTTTCCCACCACGCTTATTTGAGCTCCTCGAGAAGGAAATTCTTTATTATAGGAAGACCATAGGCTATAAGGTCCCAAGGAATCCTGATATCCCAAATCCAGCTGTGACTCAAAGAGAGGAGCAAAAAAAGATTGATGGAGCTGAACCTCTTACACCAGAAGAGACTGAAGAAAAGGAAAAACTTCTCACACAAGGATTCACAAACTGGACTAAGCGAGATTTTAATCAGTTTATTAAAGCTAATGAGAAGTATGGAAGAGATGACATTGATAATATAGCTCGAGAGGTGGAGGGCAAATCTCCTGAGGAGGTCATGGAGTATTCAGCTGTATTTTGGGAACGTTGCAATGAATTACAGGACATTGAGAAAATTATGGCTCAAATTGAACGTGGAGAAGCAAGAATTCAACGAAGGATCAGTATCAAGAAAGCCCTGGATGCCAAAATTGCAAGATACAAGGCTCCATTTCATCAGTTACGTATTCAGTATGGAACCAGCAAAGGAAAGAACTATACTGAGGAAGAAGATCGATTCTTGATTTGTATGTTACACAAAATGGGCTTTGATAGAGAAAACGTGTATGAAGAATTAAGACAGTGTGTTCGGAATGCCCCTCAGTTTAGATTTGACTGGTTTATCAAGTCTAGAACCGCCATG

Related Sequences

bmy_20500T0 Protein

Length: 946 aa      View alignments
>bmy_20500T0
MEPDTAAVAATVAASDATATIVVIEDEQPGPSTSKEEGAAAAATEATVAKEKGEKKKEKNLSPFQLKLAAKASKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLGRPRIKKDDKQSLISVGDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNVPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKMAKEEMLQMIRHGATHVFASKESELTDEDITTLLERGEKKTAEMNERLQKMGESSLRNFRMDTEQSLYKFEGEDYREKQKLGMVEWIEPPKRERKANYAVDAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPDIPNPAVTQREEQKKIDGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDAKIARYKAPFHQLRIQYGTSKGKNYTEEEDRFLICMLHKMGFDRENVYEELRQCVRNAPQFRFDWFIKSRTAM