Part of scaffold_2528 (Scaffold)

For more information consult the page for scaffold_2528 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

MMP17 ENSTTRG00000013499 (Bottlenosed dolphin)

Gene Details

matrix metallopeptidase 17 (membrane-inserted)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000012813, Bottlenosed dolphin)

Protein Percentage 95.71%
cDNA percentage 96.52%
Ka/Ks Ratio 0.13754 (Ka = 0.018, Ks = 0.131)

MMP17 ENSBTAG00000002145 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000029696, Cow)

Protein Percentage 94.31%
cDNA percentage 93.16%
Ka/Ks Ratio 0.06573 (Ka = 0.0257, Ks = 0.3913)

MMP17  (Minke Whale)

Gene Details

matrix metallopeptidase 17 (membrane-inserted)

External Links

Gene match (Identifier: BACU009029, Minke Whale)

Protein Percentage 84.93%
cDNA percentage 88.39%
Ka/Ks Ratio 0.34243 (Ka = 0.1003, Ks = 0.2928)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1518 bp    Location:210071..199880   Strand:-
>bmy_20541
ATGAGAACCCCGCGCTGTTCCCTCCCTGACCTCCCAGCTGCAGCCCCGGCTCGAAGGAGGCGCCAGGCTCTGGCCCCGACCAAGTGGGGCAGGAGGAACCTGTCATGGAGGTGGGTGGGCGGGGCTCCACCTGGCCTGGCCTTTCCGGGGGTCCGCACGTTCCCGCGGGACTCGCCCCTGGGCCGCGACACGGTGCGCGCGCTCATGCACTACGCGCTCAAAGTCTGGAGTGACCTCACGCCCCTGAACTTCCACGAGGTGGCCGGCAGTGCCGCCGACATCCAGATCGACTTCTCCACAGCTGACCACAACGACCGCTACCCCTTCGACGGCCCCGGCGGCGCGGTGGCCCACGCCTTCTTCCCAGGCGACCACCACACCGCAGGGGACACCCACTTTGACGACGACGAGGCCTGGACGTTCCGCTCCTCAGATGCCCACGGCATGGACCTGTTCGCAGTGGCTGTCCACGAGTTTGGCCATGCCATCGGGCTGAGCCACGTGGCGGCCACACGCTCCATCATGCAGCCATACTACCAGGGCCCGGTGGGTGACCCGCTGCGCTACGGGCTCCCCTATGAGGACAGGGTGCGCGTCTGGCAGCTGTACGGCGTGCGGGAGTCCGTGTCCCCAACGGCACAGCCGGACACCCCAGAGCCCGAGGAGCCGCCCCTCCTGCCGGAGCCCCCTGACGATCGCTCTAGCAGCCCGCCCAGGAAGGATGTGCCCCACAGATGCAGCGCCCACTTTGACGCCGTGGCCCAGATCCGAGGCGAGGCCTTCTTCTTCAAAGGCAAGTACTTCTGGCGGCTGACCCGGGACCGGCACCTGGTGTCGCTGCAGCCGGCACAGGTGCACCGCTTCTGGCGGGGGCTGCCGCTGCACCTGGAGAGCGTGGACGCCGTGTACGAGCGCACCAGTGACCACAAGATCGTCTTCTTCAAAGGAGACAGATACTGGGTGTTTAAGGACAATAACGTAGAGGAAGGATACCCGCGGCCCATCTCGGACTTCGGCCTCCCGCCGGGCGGCGTCGATGCTGCCTTCTCCTGGGCCCACAATGACAAGACTTATTTCTTTAAGGACCAGCTGTACTGGCGCTACGATGAGCACACACGGCGCATGGACCCTGGCCACCCCGCCCAGAGCCCCCCATGGAGGGGCGTCCCCAGCACGCTCGACGATGCCATGCGCTGGTCCGATGGTGCCGCCTACTTCTTCCGTGGCACGGAGTACTGGAAGGTGCTGGACGGCGAGCTGGAGGTGGCGCCCGGGTGCCCGCAGTCCACGGCCCGGGACTGGCTGGTCTGCAGAGACCCACCCGCTGACCCCGAGGGCGCAGACGGAGAGGCCGGGGCCCACGCCCGGCCGGGGCAGCGCGACCACAGCCGCTCAGAGGACGCCTACGAGGTCTGCTCCTGCACCTCCATCGCCGCCCCAGCACCGCGGGCCGCGGACCCACTGCTGGCCGCGCTGCTGAGCTTCCTGTGGACAGCGGCCCGGGCCCTGGCGCTATGA

Related Sequences

bmy_20541T0 Protein

Length: 506 aa      View alignments
>bmy_20541T0
MRTPRCSLPDLPAAAPARRRRQALAPTKWGRRNLSWRWVGGAPPGLAFPGVRTFPRDSPLGRDTVRALMHYALKVWSDLTPLNFHEVAGSAADIQIDFSTADHNDRYPFDGPGGAVAHAFFPGDHHTAGDTHFDDDEAWTFRSSDAHGMDLFAVAVHEFGHAIGLSHVAATRSIMQPYYQGPVGDPLRYGLPYEDRVRVWQLYGVRESVSPTAQPDTPEPEEPPLLPEPPDDRSSSPPRKDVPHRCSAHFDAVAQIRGEAFFFKGKYFWRLTRDRHLVSLQPAQVHRFWRGLPLHLESVDAVYERTSDHKIVFFKGDRYWVFKDNNVEEGYPRPISDFGLPPGGVDAAFSWAHNDKTYFFKDQLYWRYDEHTRRMDPGHPAQSPPWRGVPSTLDDAMRWSDGAAYFFRGTEYWKVLDGELEVAPGCPQSTARDWLVCRDPPADPEGADGEAGAHARPGQRDHSRSEDAYEVCSCTSIAAPAPRAADPLLAALLSFLWTAARALAL*