Part of scaffold_2554 (Scaffold)

For more information consult the page for scaffold_2554 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LSM11 ENSTTRG00000006445 (Bottlenosed dolphin)

Gene Details

LSM11, U7 small nuclear RNA associated

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000006100, Bottlenosed dolphin)

Protein Percentage 96.97%
cDNA percentage 97.73%
Ka/Ks Ratio 0.61622 (Ka = 0.0197, Ks = 0.032)

LSM11 ENSBTAG00000010363 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000013683, Cow)

Protein Percentage 94.75%
cDNA percentage 93.99%
Ka/Ks Ratio 0.18186 (Ka = 0.0297, Ks = 0.1636)

LSM11  (Minke Whale)

Gene Details

LSM11, U7 small nuclear RNA associated

External Links

Gene match (Identifier: BACU000783, Minke Whale)

Protein Percentage 100.0%
cDNA percentage 99.51%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0176)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1083 bp    Location:15126..28605   Strand:+
>bmy_20571
ATGGAGGAGCGGGAGAGGGGGGCGAGGTCGGCTCGCGCCGGCAGCCCTGCGCGCCCGCCCAGCCCGCGGCTGGATGTCAGCTCTGACAGCTTCGACCCACTGCTGGCCCTGTACGCGCCTCGCCTGCCTCCCATCCCCTACCCCAACGCGCCCTGCTTCAACAACCTGGCCGAGTACGAGAGCTTCCTCAGGACCGGGTGCCGGGGCGGCGGGCGCGGACGGGCGCGGGGCGCGGCCGCGGGCTCTGGGGGCCCCGCTACCGCCGCCGCCGGGCCCTTGGGCAGGACCCGCCGCCGCCCGGACATCCCCGCCCCGGACCCCGAGCGCATCCAGCGCCTCCGCCGCCTCATGGTGGCCAAGGAGGAAGGGGACGGGGCCGCCGGGGCGCGGCGGCGGGGTCCGGGTCGGAGCAGGAAGGCGCCGCGCAACGTGCTCACGAGAATGCCCTTGCACGAAGGCAGCCCTCTGGGTGAACTCCATCGTTGTATCCGGGAGGGGGTGAAGGTGAATGTTCACATCCGCACTTTCAAGGGACTTCGGGGCGTCTGTACGGGCTTCCTTGTTGCATTTGACAAGTTCTGGAATATGGCACTTACTGATGTGGATGAGACCTACCGAAAACCTGTTCTAGGCAAAGCATATGAACGGGATTCTTCATTGACTCTCACTAGGCTCTTTGATCGACTAAAACTGCAGGATTCCTCCAAGAAGGAAACAGATTCCAAGTCTGCAGTTGAAGACTCCACTCTGTCCAGATACTCCCAGACATCCACCTGGAAGGTGGCTTCAGTGTGGGGAAGAGGAGACACTGACCGGGGTTCACGCAGGCGTTCCCGTTCCGTCCCTTCTTCCCTGCAGGCATCGGCAAGGGAGGAGTCCAGGTCAGAGCTGTCAGGGAGGACTACACAGACAGAAGGGTCGAGTGCGGGAGGTACCTTTTCCAGGGCCACCACCCTTTCCAGGGGCCAGCCCCGTAAGAAAAAGCGAAAGCCCAAAGTGGATTACCAACAGGTATTCACTCGACACATAAATCAGATTTTCATTCGAGGCGAGAATGTCCTGCTGGTTCATCTTGCACAGTGA

Related Sequences

bmy_20571T0 Protein

Length: 361 aa      View alignments
>bmy_20571T0
MEERERGARSARAGSPARPPSPRLDVSSDSFDPLLALYAPRLPPIPYPNAPCFNNLAEYESFLRTGCRGGGRGRARGAAAGSGGPATAAAGPLGRTRRRPDIPAPDPERIQRLRRLMVAKEEGDGAAGARRRGPGRSRKAPRNVLTRMPLHEGSPLGELHRCIREGVKVNVHIRTFKGLRGVCTGFLVAFDKFWNMALTDVDETYRKPVLGKAYERDSSLTLTRLFDRLKLQDSSKKETDSKSAVEDSTLSRYSQTSTWKVASVWGRGDTDRGSRRRSRSVPSSLQASAREESRSELSGRTTQTEGSSAGGTFSRATTLSRGQPRKKKRKPKVDYQQVFTRHINQIFIRGENVLLVHLAQ*