Part of scaffold_2533 (Scaffold)

For more information consult the page for scaffold_2533 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LIN54 ENSTTRG00000007680 (Bottlenosed dolphin)

Gene Details

lin-54 homolog (C. elegans)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000007266, Bottlenosed dolphin)

Protein Percentage 89.15%
cDNA percentage 89.46%
Ka/Ks Ratio 0.31377 (Ka = 0.0042, Ks = 0.0134)

LIN54 ENSBTAG00000010546 (Cow)

Gene Details

protein lin-54 homolog

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000030381, Cow)

Protein Percentage 98.66%
cDNA percentage 96.57%
Ka/Ks Ratio 0.0584 (Ka = 0.0065, Ks = 0.1106)

LIN54  (Minke Whale)

Gene Details

lin-54 homolog (C. elegans)

External Links

Gene match (Identifier: BACU002012, Minke Whale)

Protein Percentage 99.45%
cDNA percentage 99.45%
Ka/Ks Ratio 0.24892 (Ka = 0.0026, Ks = 0.0104)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2247 bp    Location:75549..129942   Strand:+
>bmy_20585
ATGGAGGTGGTGCCAGCTGAGGTGAATAGTTTGCTTCCAGAGGAGATAATGGACACTGGTATAACTTTAGTGGATGATGATAGTATTGAGGCTGTTATTGTTTCATCCCCAATTCCCATGGAGACAGAACTGGAAGAAATTGTCAACATAAATTCTACTGGTGACTCTACAGCCACGCCCATTTCCACGGAACCAATAACAGTGTACAGTAACCACACTAACCAAGTTGCAGTGAATACCACAATTACTAAAGCAGATTGTAATACCACAGTGAAACCAGCTTTTCCAAGTGGCCTTCAAAAACTTGGTGCTCAGACTCCTGTGACTATATCAGCCAATCAGATTATTTTAAACAAAGTATCACAGACATCTGATCTTAAACTTGGCAATCAGACCCTTAAACCAGATGGACAGAAGTTAATTTTAACAACTTTGGGCAAGTCTGGTTCACCAATTGTTTTAGCACTACCCCATAGCCAACCCCAGGCTCAGAAAGTTACAACTCAGGCCCAGTCAGGAGATGCTAAGTTACCACCGCAGCAAATTAAAGTAGTTACCATTGGAGGGAGGCCAGAGGTGAAACCTGTCATTGGTGTCTCAGCATTGACCCCAGGAAGTCAACTGATTAATACTACAACTCAGCCCTCTGTGTTACAGACCCAACAGTTAAAAACAGTACAGATTGCGAAGAAGCCTCGAACACCAACCTCTGGTCCAGTAATCACGAAGCTGATCTTTGCAAAACCAATTAATAGTAAAGCAGTTACAGGACAGACAACTCAAGTATCACCACCAGTCATTGCAGGTAGGGTTCTTTCACAGTCTACTCCCGGGACTCCATCAAAGACCATAACAATATCTGAAAGTGGTGTTATTGGATCAACTTTAAATTCTACAACACAGACACCAAATAAAATAGCCATCTCACCTTTGAAATCGCCAAATAAGGCAGTGAAATCAGCTGTGCAGACCATCACTGTTGGAGGAGTGAGCACATCACAATTTAAGACAATTATTCCTCTGGCAACTGCTCCCAATGTCCAGCAGATTCAAGTGCCCGGAAGCAAGTTTCATTATGTCCGACTTGTTACTGCCACAACAGCCAGTAGCTCAACCCAGCCAGTTAGTCAGAATCCCAGTACAAACACTCAGCCTCTTCAGCAAGCAAAGCCAGTGGTCGTTAATACCACCCCAGTGCGGATGTCAGTGCCACTTGTCTCAGCGCAGACTGTCAAACAAGTTGTTCCGAAACCAATCAATCCAACTTCCCAAATAGTCACCACCAGCCAGCCACAGCAGCGGCTTATCATGCCTGCCACCCCACTGCCACAAATCCAGCCAAACCTCACGAACCTGCCACCAGGCACTGTGCTGGCACCGGCTCCGGGAACAGGGAATGTAGGCTATGCGGTGCTTCCTGCTCAGTATGTGACTCAGCTACAGCAGTCTTCCTATGTGTCTATAGCAAGCAACTCTAACTTTACCGGAACACCTGGTATCCAGACCCAGGCAAGGCTTCCRTTYAATGGCATAATGCCATCAGAGTCTGCCAGTCGGCCCAGAAAGCCTTGTAATTGTACAAAATCGCTGTGTTTGAAATTATACTGTGATTGCTTTGCAAATGGTGAATTTTGCAACAACTGCAATTGTACTAATTGTTATAATAACTTGGAACATGAAAATGAAAGGCAAAAAGCAATAAAGGCATGCCTTGACAGAAATCCAGAAGCTTTTAAGCCCAAGATAGGGAAAGGAAAGGAGGGAGAATCAGATCGACGTCACAGCAAAGGATGTAATTGCAAACGATCAGGATGTCTTAAAAACTACTGTGAATGCTATGAGGCAAAAATAATGTGTTCCTCAATATGCAAATGTATTGGCTGTAAGAATTTTGAAGAAAGCCCAGAAAGAAAGACATTGATGCACTTGGCAGATGCAGCCGAAGTAAGGGTACAGCAACAAACAGCAGCAAAGACTAAGTTATCCTCTCAGATTTCGGACTTGCTTACTAGGCCAACACCAGCTTTGAATAGCGGAGGAGGAAAATTGCCATTTACGTTTGTCACTAAGGAAGTAGCTGAAGCCACGTGTAATTGCCTTCTTGCCCAGGCAGAGCAGGCAGACAAGAAGGGGAAATCAAAGGCAGCAGCTGAACGGATGATACTTGAGGAATTCGGGCGATGTTTGATGAGCGTCATCAACTCTGCAGGAAAAGCAAAAAGTGACCCTTGTGCCATGAATTGCTAA

Related Sequences

bmy_20585T0 Protein

Length: 749 aa      View alignments
>bmy_20585T0
MEVVPAEVNSLLPEEIMDTGITLVDDDSIEAVIVSSPIPMETELEEIVNINSTGDSTATPISTEPITVYSNHTNQVAVNTTITKADCNTTVKPAFPSGLQKLGAQTPVTISANQIILNKVSQTSDLKLGNQTLKPDGQKLILTTLGKSGSPIVLALPHSQPQAQKVTTQAQSGDAKLPPQQIKVVTIGGRPEVKPVIGVSALTPGSQLINTTTQPSVLQTQQLKTVQIAKKPRTPTSGPVITKLIFAKPINSKAVTGQTTQVSPPVIAGRVLSQSTPGTPSKTITISESGVIGSTLNSTTQTPNKIAISPLKSPNKAVKSAVQTITVGGVSTSQFKTIIPLATAPNVQQIQVPGSKFHYVRLVTATTASSSTQPVSQNPSTNTQPLQQAKPVVVNTTPVRMSVPLVSAQTVKQVVPKPINPTSQIVTTSQPQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQLQQSSYVSIASNSNFTGTPGIQTQARLPFNGIMPSESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESPERKTLMHLADAAEVRVQQQTAAKTKLSSQISDLLTRPTPALNSGGGKLPFTFVTKEVAEATCNCLLAQAEQADKKGKSKAAAERMILEEFGRCLMSVINSAGKAKSDPCAMNC*