Sequence details bmy_20625 (Coding sequence)

Part of scaffold_2584 (Scaffold)

For more information consult the page for scaffold_2584 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

A1CF ENSTTRG00000013190 (Bottlenosed dolphin)

Gene Details

APOBEC1 complementation factor

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000012517, Bottlenosed dolphin)

Protein Percentage 94.08%
cDNA percentage 93.84%
Ka/Ks Ratio 0.23082 (Ka = 0.0082, Ks = 0.0356)

A1CF ENSBTAG00000021195 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000033080, Cow)

Protein Percentage 97.35%
cDNA percentage 94.28%
Ka/Ks Ratio 0.07011 (Ka = 0.0137, Ks = 0.1948)

A1CF  (Minke Whale)

Gene Details

APOBEC1 complementation factor

External Links

Gene match (Identifier: BACU009900, Minke Whale)

Protein Percentage 94.91%
cDNA percentage 95.21%
Ka/Ks Ratio 0.45237 (Ka = 0.0383, Ks = 0.0847)

Additional orthologs identified in other species via the OPTIC pipeline.

A1CF (Human)   A1cf (Mouse)  

Genome Location

Sequence Coding sequence

Length: 1698 bp    Location:197070..144343   Strand:-
Raw sequence 
>bmy_20625
ATGATAGAAGAAAATGGACAAAGAAAATATGGTGGTCCCCCGCCTGGTTGGGATGCTGCACCCCCAGAAAGGGGCTGTGAAATTTTTATTGGAAAACTTCCCCGAGACCTTTTTGAAGATGAACTTATACCATTATGTGAAAAAATTGGTAAAATTTATGAAATGAGAATGATGATGGATTTTAATGGCAACAATAGAGGATATGCATTTGTAACATTCTCAAATAAACAAGAAGCCAAGAATGCAATCAAGCAACTTAATAATTATGAAATTAGAAATGGGCGTCTGTTAGGGGTTTGTGCCAGCGTGGACAACTGTCGATTATTTGTTGGGGGAATCCCAAAAACCAAAAAGAGAGAAGAAATCTTATCAGAGATGAAAAAGGTCACCGAAGGAGTTGTGGATGTCATTGTCTACCCAAGTGCTGCAGATAAAACCAAAAACCGGGGCTTTGCCTTCGTGGAGTATGAGAATCATCGGGCAGCTGCCATGGCCCGGAGGAAGCTTCTGCCAGGAAGAATTCAGTTATGGGGACATCCTATCGCAGTAGACTGGGCAGAACCAGAAGTAGAAGTTGATGAAGACACAATGTCTTCCGTGAAAATCCTATATGTAAGAAACCTAATGCTGTCTACCTCTGAAGAGATGATTGAGAAAGAATTCAACAATATTAAACCAGGTGCTGTGGAGAGGGTAAAGAAAATCCGAGACTATGCTTTCGTGCACTTCACTAACAGAGAAGATGCAGTGGAGGCTATGAAAGCTTTAAATGGGAAGGTGCTGGATGGGTCCCCCATCGAAGTGACCCTAGCCAAACCAGTGGACAAGGATAGTTATGTTAGGTACACCCGAGGAACAGGTGGAAGGGGCACCATGCTTCAGGGAGAGTACACCTACTCCTTGGGCCATGTTTATGATCCCACCACAGCCTACCTTGGAGCTCCTGTCTTCTATGCCCCCCAGGCCTACACAGCGATTCCCAGCCTTCATTTCCCAGCCACCAAAGGACATCTTGGCAACAGGGCCATTATCAGAGCCCCTTCTGTTAGAGAAATTTACATGAATGTACCTGTAGGGGCTGCGGGAGTGAGAGGACTGGGCGGCCGTGGCTATTTGGCTTACACAGGCCTGGGTCGAGGATACCAGGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTTTGCCTGGGATGGAGCTCACCCCAATGAATCCTGTCACTTTAAAACCCCAAGGAATTAAACTTGCTCCACAGATATTAGAAGAAGTTTGTCAGAAAAATAACTGGGGACAACCTGTATATCAGCTGCACTCTGCCATTGGACAAGATCAAAGACAACTCTTCTTATACAAAATAACTATTCCTGCCCTGTCCAGCCAGAATCCTGTCATCCACCCTTTCACACCCCCGAAGCTAAGTGCCTATGTGGATGAAGCAAAGACATATGCAGCCGAGTACACCCTGCAGAGCCTGGGCATCCCCACCGATGGAGCCGATGCCCAGACCGCAGCTGCTGTTGCCGCTTCTGCTACCGCATTTCCAGGCTATGCTGTCCCTAATGCAACTGCATCTGTGTCTGCAGCCCAGCTCAAGCAAGCGGTGACCCTAGGACAAGACTTAGCAGCATATGCAACGTATGAGGTCTACCCCACATTTGCAGTGACTGCCCAAGGGGATGGATATGGAACCTTCTGA

Related Sequences

bmy_20625T0 Protein

Length: 566 aa      View alignments
>bmy_20625T0
MIEENGQRKYGGPPPGWDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFTNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQGEYTYSLGHVYDPTTAYLGAPVFYAPQAYTAIPSLHFPATKGHLGNRAIIRAPSVREIYMNVPVGAAGVRGLGGRGYLAYTGLGRGYQVKGDKREDKLYDLLPGMELTPMNPVTLKPQGIKLAPQILEEVCQKNNWGQPVYQLHSAIGQDQRQLFLYKITIPALSSQNPVIHPFTPPKLSAYVDEAKTYAAEYTLQSLGIPTDGADAQTAAAVAASATAFPGYAVPNATASVSAAQLKQAVTLGQDLAAYATYEVYPTFAVTAQGDGYGTF*