Sequence detailsbmy_20645 (Coding sequence)

Part of scaffold_2564 (SequenceType object (1))

For more information consult the page for scaffold_2564 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SMG5ENSTTRG00000001401 (Bottlenosed dolphin)

Gene Details

SMG5 nonsense mediated mRNA decay factor

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000001319, Bottlenosed dolphin)

Protein Percentage 77.06%
cDNA percentage 83.95%
Ka/Ks Ratio 0.64458 (Ka = 0.1233, Ks = 0.1912)

SMG5ENSBTAG00000009435 (Cow)

Gene Details

protein SMG5

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000012415, Cow)

Protein Percentage 79.33%
cDNA percentage 86.53%
Ka/Ks Ratio 0.52878 (Ka = 0.1267, Ks = 0.2396)

Genome Location

Sequence SequenceType object (2)

Length: 2268 bp    Location:187084..184599   Strand:-
Raw sequence 
>bmy_20645
ATGAGCCAAGGCCCCCCCACCACCACCAAAGGGGAGAGCAGCGAGCCCGCGAAGCAAAGGTCCCCAACACTAAGCGGCTTTATCCGGGCTGTGGTGAAGGCTGTGCATCGACTTGACCTCATCCTTTGCAACAAAACCGCTTATCAAGAAGGCTGTGATCTCTGCGTCAAGCACCCGGTGGACTACGGGAGGAAGGCTGAACAGCTGCTGTGGAGAAAGGTATGCTGCGAAGTTATCCAGCTTATCACGACTAGCAGAAAGCATATCCACAGCCGGAGCACCTTAGAATGTGCCTACAGGACACACCTGGTCGCTGGGATTGGCTTCTACCAGCATCTCCTTCTCTATATCCAGTCCCACTACCAGCTAGAACTGCAAGGCTGCATCGACTGGACCCATGTCACCGACCCCCTCATAGGATGCAGGAAGCCAGTGTCTGCCTCAGGGAAGGAGATGGATTGGGCACAGACGGCATGCCACCAATGGCTAGCAGCAAGTACTATAACGTGGAAGCCATGTATTGCTACCTGTGCTGCATCTAGTTGGAAGGGTCCTTTGAGGGGGCCTATGGGAATCTCAAGCGGCTGTGTGACAAGGCAGCCAAAATGTACCACAGCTGAAGAAAAGCGATGTAAAGACATTAAGAGGTTGCTGGTGAACTTTATGTATCTGCAAAGCCTCCTGCAGCCCAAAAGCAGCTCCCTGGACTCAAAGCTGATGTCACTTTGCCAGTCAGTCCTGAAGGACTTCAAGCTCTGTCTCTCCTACCTGCCCTCCCCACCCAACCTCAGCCTGGCCAGTGCGGATGAGGAGGAGTATGAGAGGGGATATGCTTTCCTCCCAGACCTTCTCATCTTTCAAACGGTCATCATCTGCTTTGTGGGTGTGCACAGCTTGAAGAGAGCAGGATCCAAGCAGTACAGTGCAGCTATTGCCTTCACCCTGGCCCTCTTCTCCCGCCTCGTCAATCATGTCAACATAGGGCTGCAAGCTGAGCTGCAAGAGGGCGAGACTCCTGTCCCGGCATTCCAGAGCGATGGCACAGATGAACCAGAGTCCAAGGGACCCTTGGAGAAGGAGGAGGGTCTGGGTCTTGAGCCTCCTCCTGCAGCACCTCAAGAGGGCAAAGTCAGAAAGAACCAGAAGTTCTCCCGCCTCTCCTGCCTCTGCCGCCCACCCACAGCTGGTGATGACAGTGACATGAGTGAAGGCTTTGACCATGACTCAGCCCAGGACAGCGAGGGCTCGGACAGTGGCTCTGACAAGAGTCTTGAAGGTGGGGGAACGTCCTTTGATGCCAAGACAGATTCAGAAATGAAGAGCCAAGAGTCCAGATCAGACCTGGAAGATAAGGAGGATGAGGAAGGGACACGGGCCCTAGCCCTGGAGCCACCTCGGGCCGGGTCAGAGGCTCCTGAATCCTTCAATGGCCCACTGGACCCCAGCGAGGCCAGCATTGCCAGCAATCTACAAGCGATGTCCACCCAGATGTTCCAGACTAAAGGCTGCTTCCAACTGGCCCCCACCTTCAGCAACCTGCTCCTCCAGCCCACCACCAAAGCTCCCACCTTGGCCAGCCCCAGGCCCTGTGTCAATGGGGATGCGGACAAGCCCTCAGAGCCAGCCTCTGAAGAGGGCTCTGAGTCGGAGGGAAGTGAGTCCAACAGTGGGCGGGGCTGTTGGAACAAGCACAGCATCCAGGAGAAGCTGCAAGTCCTCATGGCCGAAGGCCAGCTTCCTGCTGTGAAAGTCTTCCTGGGCTGGCCGCGAGCCAACCGCAGCATCATCCTTGTATGTGCGCAGAGCTCTCTAAGTCTGTGGAACTGCCTGTCTGTGTTGCTGAATCTGTTGCCAGCTGCTGGCGAAATCCAAGAGTCTGGCCTGGTCCTGTGTCCCAAGGTCCAGGATCTCCTTGAAGGTTGTGAACTGCCTGACCGCCCGTCTAGCCTGCTGCTCCCAGAGGACATGGCACTTCACAGTCTGCCTCCCCTCCAGGCTGCCCACAGATGCTTTAACTTTGACATGGATCAGCTCTTGCTCAGCACCTTAGAGGAGACAGTCGTGCACATCTGCTGCATCCACAGCTTTGGCCACTTCATTGCCCGCCTGCACGGCAGCAGCCTACAGTTCAACCCAGAGGTCAGCATCTTTGTCAGCATCTCCCAGTCTGAGCAAGAGAGGCTGCAGCAGCAGGCCCGGGYCCAGTTCCGCATGGCACAGGAGGAAGCTCGGCGGAATGGGCTAATGAGAGACATGGCCCAGCTATGA

Related Sequences

bmy_20645T0 SequenceType object (3)

Length: 756 aa      View alignments
>bmy_20645T0
MSQGPPTTTKGESSEPAKQRSPTLSGFIRAVVKAVHRLDLILCNKTAYQEGCDLCVKHPVDYGRKAEQLLWRKVCCEVIQLITTSRKHIHSRSTLECAYRTHLVAGIGFYQHLLLYIQSHYQLELQGCIDWTHVTDPLIGCRKPVSASGKEMDWAQTACHQWLAASTITWKPCIATCAASSWKGPLRGPMGISSGCVTRQPKCTTAEEKRCKDIKRLLVNFMYLQSLLQPKSSSLDSKLMSLCQSVLKDFKLCLSYLPSPPNLSLASADEEEYERGYAFLPDLLIFQTVIICFVGVHSLKRAGSKQYSAAIAFTLALFSRLVNHVNIGLQAELQEGETPVPAFQSDGTDEPESKGPLEKEEGLGLEPPPAAPQEGKVRKNQKFSRLSCLCRPPTAGDDSDMSEGFDHDSAQDSEGSDSGSDKSLEGGGTSFDAKTDSEMKSQESRSDLEDKEDEEGTRALALEPPRAGSEAPESFNGPLDPSEASIASNLQAMSTQMFQTKGCFQLAPTFSNLLLQPTTKAPTLASPRPCVNGDADKPSEPASEEGSESEGSESNSGRGCWNKHSIQEKLQVLMAEGQLPAVKVFLGWPRANRSIILVCAQSSLSLWNCLSVLLNLLPAAGEIQESGLVLCPKVQDLLEGCELPDRPSSLLLPEDMALHSLPPLQAAHRCFNFDMDQLLLSTLEETVVHICCIHSFGHFIARLHGSSLQFNPEVSIFVSISQSEQERLQQQARXQFRMAQEEARRNGLMRDMAQL*