Part of scaffold_2562 (Scaffold)

For more information consult the page for scaffold_2562 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SDC2 ENSTTRG00000000098 (Bottlenosed dolphin)

Gene Details

syndecan 2

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000000090, Bottlenosed dolphin)

Protein Percentage 96.7%
cDNA percentage 97.25%
Ka/Ks Ratio 0.23674 (Ka = 0.0136, Ks = 0.0574)

SDC2 ENSBTAG00000014357 (Cow)

Gene Details

Syndecan-2

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000019090, Cow)

Protein Percentage 86.14%
cDNA percentage 87.79%
Ka/Ks Ratio 0.37851 (Ka = 0.0947, Ks = 0.2502)

SDC2  (Minke Whale)

Gene Details

syndecan 2

External Links

Gene match (Identifier: BACU000508, Minke Whale)

Protein Percentage 98.35%
cDNA percentage 98.9%
Ka/Ks Ratio 0.36525 (Ka = 0.0058, Ks = 0.0159)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 741 bp    Location:154413..133223   Strand:-
>bmy_20672
ATGGAGCCCAGGGTTTGGGTGGAGGAAGTGGCAGCAGCTGACACTGGAAATGCAGGTGATAGGTGCCTGGAAGACCACAAGTGCACTAATCTCGATTTTAGTAAGCAATATCACAAACCTGCCCACTTTCTCAGCAAAGAAAATCGTGGGATAGCAACTGAACAAATGTACTTGTTGGTTTTTTCTTGTGAGCGGGCAGAGCTGACGTCTGATAAAGACATGTACCTTGACAACAGCTCCATTGAAGAAGCTTCAGGAGTGTATCCTATTGATGACGATGACTATGCTTCTGCATCAGGCTCGGGAGCTGATGAGGACGGAGAGAGTCCAGAGCTGACCACGTCTCGACCCCTTCCAAAGCTTCTGTTCACTAGTGCTGCTCCGAGAGTGGAAACCACGACTCTGAACAAGATACAGAATAAGATCCCCGCTCAGACAAAGTCACCTGAAGAAATTGATAAGGAAGAAGTTCACCTCTCTGACTCAGAAAGGAAAATGGACCCAGCTGAAGAGGSTACAAATGTGTATACTGAGAAGCACTCAGACAATCTGTTCAAACGAACAGAAGTCCTGGCAGCTGTCATTGCTGGCGGAGTGATCGGCTTTCTCTTTGCAATTTTCCTTATCCTGCTGTTGGTGTATCGCATGAGAAAGAAGGATGAAGGAAGTTATGACCTTGGAGAACGCAAGCCATCCAGTACTGCTTATCAGAAGGCACCTACTAAGGAGTTTTATGCGTGA

Related Sequences

bmy_20672T0 Protein

Length: 247 aa      View alignments
>bmy_20672T0
MEPRVWVEEVAAADTGNAGDRCLEDHKCTNLDFSKQYHKPAHFLSKENRGIATEQMYLLVFSCERAELTSDKDMYLDNSSIEEASGVYPIDDDDYASASGSGADEDGESPELTTSRPLPKLLFTSAAPRVETTTLNKIQNKIPAQTKSPEEIDKEEVHLSDSERKMDPAEEXTNVYTEKHSDNLFKRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGERKPSSTAYQKAPTKEFYA*