Sequence detailsbmy_20688 (Coding sequence)

Part of scaffold_2590 (SequenceType object (1))

For more information consult the page for scaffold_2590 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

POLR2BENSTTRG00000010839 (Bottlenosed dolphin)

Gene Details

polymerase (RNA) II (DNA directed) polypeptide B, 140kDa

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000010280, Bottlenosed dolphin)

Protein Percentage 97.68%
cDNA percentage 97.33%
Ka/Ks Ratio 0.20534 (Ka = 0.0144, Ks = 0.0703)

POLR2BENSBTAG00000019366 (Cow)

Gene Details

DNA-directed RNA polymerase II subunit RPB2

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000025800, Cow)

Protein Percentage 97.68%
cDNA percentage 95.05%
Ka/Ks Ratio 0.07131 (Ka = 0.014, Ks = 0.1966)

POLR2B (Minke Whale)

Gene Details

polymerase (RNA) II (DNA directed) polypeptide B, 140kDa

External Links

Gene match (Identifier: BACU000657, Minke Whale)

Protein Percentage 97.41%
cDNA percentage 97.84%
Ka/Ks Ratio 0.41053 (Ka = 0.0159, Ks = 0.0387)

Additional orthologs identified in other species via the OPTIC pipeline.

POLR2B (Human)   Polr2b (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2952 bp    Location:165781..122705   Strand:-
Raw sequence 
>bmy_20688
ATGCAATATGATGAGGATGATGATGAAATCACACCAGATTTGTGGCAAGAGGCATGCTGGATTGTAATTAGTTCCTATTTTGATGAGAAAGGCTTGGTGAGACAACAGCTGGATTCTTTTGATGAGTTTATTCAGATGTCTGTTCAAAGAATTGTGGAAGATGCTCCACCTATAGACCTACAAGCCGAAGCTCAGCATGCTAGTGGAGAAGTTGAAGAACCGCCAAGATACTTGCTGAAGTTCGAACAAATTTACCTCTCCAAGCCTACCCATTGGGAAAGAGATGGTGCTCCTTCACCGATGATGCCAAATGAGGCCAGATTAAGAAATCTCACGTACTCTGCTCCACTTTATGTTGATATAACAAAAACAGTCATTAAAGAAGGCGAAGAACAACTTCAGACACAGCATCAGAAAACTTTTATAGGAAAAATTCCAATTATGTTGCGTTCAACTTACTGCCTATTGAATGGCTTAACAGATCGTGATCTTTGTGAGTTAAATGAATGCCCCTTGGATCCTGGTGGCTACTTCATTATTAATGGATCCGAAAAGGTTCTGATTGCTCAAGAGAAAATGGCAACAAACACAGTCTATGTGTTTGCCAAAAAGGATTCTAAATATGCCTACACAGGAGAGTGTAGATCATGTCTGGAGAATTCTTCTCGACCCACCAGTACTATCTGGGTTAGCATGCTGGCAAGAGGAGGACAGGACGAGGGGGGTCGGTCTGTGTTCACACCTGCAGCCAAAGATCATTTCCAAATACAGTTGGGGGCAGTTCTAGAGGATCTTAGCAGACAGAGAGTAGAGAATGGTGCAAAAAAGAGTGCTATTGGTCAGCGCATTGTGGCAACCCTACCATATATCAAGCAAGAAGTTCCCATCATTATTGTGTTCAGAGCATTAGGTTTTGTGTCTGACAGAGATATTTTAGAGCATATTATTTATGATTTTGAAGATCCAGAGATGATGGAAATGGTTAAACCTTCTCTCGATGAAGCTTTTGTCATCCAAGAACAGAATGTCGCACTAAATTTCATTGGTTCAAGAGGGGCAAAGCCTGGTGTCACCAAAGAGAAAAGAATTAAATATGCAAAGGAAGTATTACAGAAAGAAATGCTCCCTCATGTTGGCGTCAGTGATTTTTGTGAGACCAAGAAAGCTTATTTCTTGGGGTACATGGTTCATAGGTTGCTGCTAGCAGCTTTGGGTAGAAGAGAATTAGATGACAGAGATCACTATGGAAACAAAAGATTGGACCTTGCTGGACCACTACTTGCRTTCTTATTTAGAGGGCAGAGCAGAATGGGGAAGTGCATTCCATTCTGTGGCRGTAGCGTGGTCACAGTTGTGGAGGTATTAAACCGCCTGACTTTTGCATCTACTCTTTCTCACCTGCGTCGTTTAAATTCTCCCATTGGTAGAGATGGCAAGCTAGCAAAACCAAGACAGTTGCATAATACGTTGTGGGGAATGGTGTGTCCTGCTGAGACTCCAGAGGGCCATGCTGTAGGACTTGTGAAGAATTTAGCTCTGATGGCTTATATTTCAGTTGGATCTCAACCTTCTCCAATTCTGGAATTTTTAGAAGAATGGAGTATGGAAAATTTAGAAGAAATTTCTCCTGCAGCTATTGCTGATGCAACCAAGATTTTTGTTAATGGCTGCTGGGTTGGAATACATAAAGATCCTGAACAACTTATGAACACTCTACGGAAATTGAGGCGTCAGATGGACATCATTGTGTCTGAAGATCTTGTGGCCAGTGGGGTAGTAGAATATATTGATACTCTAGAAGAAGAAACAGTGATGCTCGCAATGACCCCAGATGATTTACAGGAGAAAGAAGTAGCTTATTGTTCCACATATACGCACTGTGAGATTCATCCATCAATGATTCTTGGTGTCTGTGCATCTATTATTCCTTTTCCTGATCATAACCAGTCCCCTAGAAACACATACCAGTCTGCTATGGGTAAGCAGGCTATGGGGGTTTATATTACCAACTTTCATGTTCGTATGGATACATTGGCCCATGTTCTCTACTATCCTCAAAAACCACTTGTGACTACACGGTCAATGGAATACCTACGATTTAGAGAGCTGCCAGCAGGTATCAACTCAATTGTGGCTATTGCATCATACACTGGATATAATCAAGAAGACTCTGTCATCATGAATCGTTCAGCTGTAGACCGAGGCTTTTTCAGGTCTGTTTTCTATCGATCATACAAAGAACAGGAGTCTAAAAAAGGGTTTGATCAAGAAGAAGTTTTTGAGAAGCCTACACGTGAAACTTGCCAGGGTATGAGGCATGCTATTTATGACAAGCTGGATGATGATGGTTTGATAGCTCCTGGGGTTCGTGTATCAGGAGATGATGTTATTATAGGCAAAACAGTCACGTTGCCTGAAAATGAAGATGAATTGGAGGGCACTAATAGACGCTATACTAAGAGAGACTGTAGCACTTTTCTCAGGACTAGTGAGACGGGCATTGTGGATCAGGTTATGGTAACTCTCAACCAAGAAGGATATAAATTTTGTAAAATAAGGGTACGCTCTGTTAGAATTCCACAGATTGGAGACAAATTTGCTAGTCGACATGGTCAAAAGGGTACTTGTGGTATTCAATATAGACAAGAGTATAGAGGTGAATTCTATGATGGTGGCCTGCGTTTTGGAGAAATGGAACGAGATTGTCAGATTGCCCATGGAGCAGCGCAGTTTTTAAGGGAAAGATTGTTTGAGGCATCAGATCCATATCAGGTTCATGTTTGCAATCTTTGTGGAATAATGGCGATCGCTAACACCAGGACCCATACATATGAATGCAGGGGCTGCCGAAATAAAACCCAGATCTCTTTGGTGCGAATGCCTTATGCATGCAAACTGTTGTTTCAGGAACTCATGTCTATGAGTATTGCACCTCGAATGATGAGTGTTTAG

Related Sequences

bmy_20688T0 SequenceType object (3)

Length: 984 aa      View alignments
>bmy_20688T0
MQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQDEGGRSVFTPAAKDHFQIQLGAVLEDLSRQRVENGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGQSRMGKCIPFCGXSVVTVVEVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEYRGEFYDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV*