Part of scaffold_2662 (Scaffold)

For more information consult the page for scaffold_2662 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

IFT57 ENSTTRG00000016533 (Bottlenosed dolphin)

Gene Details

intraflagellar transport 57 homolog (Chlamydomonas)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015674, Bottlenosed dolphin)

Protein Percentage 79.8%
cDNA percentage 82.15%
Ka/Ks Ratio 0.46193 (Ka = 0.174, Ks = 0.3767)

IFT57 ENSBTAG00000005787 (Cow)

Gene Details

Intraflagellar transport protein 57 homolog

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000007606, Cow)

Protein Percentage 79.29%
cDNA percentage 79.46%
Ka/Ks Ratio 0.29522 (Ka = 0.1742, Ks = 0.5901)

IFT57  (Minke Whale)

Gene Details

intraflagellar transport 57 homolog (Chlamydomonas)

External Links

Gene match (Identifier: BACU012309, Minke Whale)

Protein Percentage 80.81%
cDNA percentage 82.66%
Ka/Ks Ratio 0.43976 (Ka = 0.167, Ks = 0.3797)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 681 bp    Location:46394..54343   Strand:+
>bmy_20876
ATGCACCAACACAAAAGTGGAATTGAATCTGCTCTAAAGGAGACCAAGGGGATAACAGCACCAGGCCAGCAACGCCTAGAACCTACAGCTTCCCAGGCTTGCTGCCCTGCCAGAAATAGGGACTTTTGGAGAATACCACAAAGAAGCAAAGCTGGAGGATTTTTGGACAAACTTCATAATGAAATTAGCAGGACTCTGGAGAAGATTGGCAGCCGAGAAAAGTACATCAACAATCAGCTTCAGCACTTGATTCAGGAATATCGTGCAGCTCAAGCCCAGCTGAGTGAGCAGACAAGGTTAGAAGGAGAAAAAAATGGAAATAAACTTGAGATACTTCCATACTTTCAGAAGTTCTCAAAGACCAAGCAGAAAGCAAGGGAGCGTTACCAGCAGGGAAACGGCGGAGTAACTGAAAGGACCAGACTCCTGTCTGAGGTTACAGAAGAGCTAGAAAAGGTAAAACAAGAAATGGAAGAAAAAGGCAGCAGTATGACTGATGGTGCTCCTTTGGTGAAGATTAAACAGAGCTTAACGAAGCTGAAGCAAGAAACTATTCAGATGGACATTAGAATCGGTGTTGTGGAACACACATTACTCCAGTCAAAATTGAAGGAGAAGTCCAACATGACCAGGGACATGCATGCCACAATCATTCCAGAATCTGCAATAGGCTCTTATTAA

Related Sequences

bmy_20876T0 Protein

Length: 227 aa      View alignments
>bmy_20876T0
MHQHKSGIESALKETKGITAPGQQRLEPTASQACCPARNRDFWRIPQRSKAGGFLDKLHNEISRTLEKIGSREKYINNQLQHLIQEYRAAQAQLSEQTRLEGEKNGNKLEILPYFQKFSKTKQKARERYQQGNGGVTERTRLLSEVTEELEKVKQEMEEKGSSMTDGAPLVKIKQSLTKLKQETIQMDIRIGVVEHTLLQSKLKEKSNMTRDMHATIIPESAIGSY*