Sequence details bmy_20986 (Coding sequence)

Part of scaffold_2706 (Scaffold)

For more information consult the page for scaffold_2706 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

USP42 ENSTTRG00000005301 (Bottlenosed dolphin)

Gene Details

ubiquitin specific peptidase 42

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000005000, Bottlenosed dolphin)

Protein Percentage 84.15%
cDNA percentage 88.53%
Ka/Ks Ratio 0.57385 (Ka = 0.0666, Ks = 0.116)

USP42 ENSBTAG00000000725 (Cow)

Gene Details

Ubiquitin carboxyl-terminal hydrolase 42

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000000967, Cow)

Protein Percentage 83.99%
cDNA percentage 87.64%
Ka/Ks Ratio 0.2695 (Ka = 0.0865, Ks = 0.321)

USP42  (Minke Whale)

Gene Details

ubiquitin specific peptidase 42

External Links

Gene match (Identifier: BACU012126, Minke Whale)

Protein Percentage 96.9%
cDNA percentage 98.03%
Ka/Ks Ratio 0.4921 (Ka = 0.0155, Ks = 0.0315)

Additional orthologs identified in other species via the OPTIC pipeline.

USP42 (Human)   Usp42 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 3462 bp    Location:107774..124175   Strand:+
Raw sequence 
>bmy_20986
ATGATGTGTACAATGCAAGCACATATTACCCAGGCACTCAGTAATCCTGGGGATGTTATTAAACCGATGTTTGTCATTAATGAGATGCGGCGCATAGCTAGGCACTTCCGCTTTGGAAGCCAAGAAGATGCCCATGAATTCCTTCAGTACACTGTTGATGCTATGCAAAAAGCATGCTTGAATGGCAGCAACAAATTAGACAGACACACCCAGGCTACCACACTCGTTTGTCAGATATTTGGAGGATACCTAAGATCTAGAGTCAAATGTTTAAATTGCAAAGGTGTGTCAGATACTTTTGATCCATATCTCGATATAACATTGGAGATAAAGGCTGCTCAGAGCGTCAACAAGGCGTTGGAGCAGTTTGTGAAGCCGGAACAGCTTGATGGAGAAAACTCGTACAAGTGCAGCAAGTATGACGGGTGTAAAAAGATGGTTCCAGCTTCAAAGAGGTTCACTATACACAGATCTTCTAATGTTCTTACACTTTCTCTGAAACGTTTTGCAAATTTTACTGGTGGAAAAATTGCTAAGGATGTGAAATATCCTGAGTATCTTGATATTCGACCGTATATGTCTCAGCCAAACGGAGAACCGATCATTTATGTTTTGTATGCAGTACTGGTACACACTGGTTTTAATTGCCATGCTGGCCATTACTTCTGCTACATAAAAGCTAGCAATGGCCTCTGGTACCAAATGAATGACTCCATCGTATCTACCAGTGATATTAGATCGGTACTCAGTCAACAAGCTTATGTTCTCTTTTATATCAGGTCCCACGATGTGAAAAATGGAGGTGAACTTACTCATTCCGCCCACAGCCCTGGCCAGTCCTCTCCCCGACCGAACCCACCTCATCTAAATGGGACGGGACCCTTGAAGGAAACGCCGAGCAGCTCCATGTCAAGTCCTAACGGGAATTCCAACGTCAGTAGGACTGGCCCTGTTAACGCCTCAACGTCTGTTCAGAACTGGTCAGTTAACAGGCCCTCAGTTATTCCAGAACATCCCAAGAAGCAGAAAATCACGATCAGTATTCACAACAAGTTACCTGTGTGCCAAGGTCAGTCTCAGCCTTCCCTTCACAGCAATTCTTTGGAGAGCCCCGACAAGCCTGCCCCCTCTTCTGCCATTGCCACCTCTTCTGCAATACAGTCTACCTCGAGTGCCCCCACGATGCCCGCGTCTAGTGAGGTAACAAAGCAGATCACCCTGAGGGAGGCCTGCCCTGAGCCTGTGATGAACGGCAGGTCCAAGCTGAGCTCCGGCGTGCTGGTCCCCTACGGCGCCGAGTCGTCCGAAGAGTCCGACGAGGAGGCGAAGGGCCTCGGCAAGGAGAACGGTCTCGGTCCCCCCGAGAGTGCGCGCGCCCCTGCTCCGGAGGCCGAAGATGGCGGGGCCTCTCCGCACGAGCTCCGAGAGCCCGTGGCTCTAAATGGTGCTACCAGTACGGACAGTGACCCGAAAGAAAACGGCCTGCCCTCGGATGCTGCCACCTGCCAAGTCCAGCCCGCTCTACACTCAGAAAACCCCTTTTCTAAGGCAAACGGTCTCCCTGGGAAGTTGATGCCTGCTCCTTTGCCACCTCTCCCAGAAGACAAAATCTTAGAGACCTTCAAACTCAGCAGCAAAGGGAAAGGCTCCACAGATGAGACGAGTACAACTGGGACAGAGGAGGGGCCTCCGCAGGACCCTGAGGCTGAGCTGGAGGCTGGCAGCTCCGCTCCCGATTCCCGTGAGAACCTGGAGCTGGTCACGAGCCTTAGCAGCAAATTCAAGAAGGTTTTGTCGCCCTCGGACCCCAGCATCAAACCTACCAAAGAAGAAGTCTCTGAAAACATTTTGGCGAAACCCGAGGAGGCTTTGCCGGGTATCAACACCTTTTGTAACACCAACAAGGATACCCTCGGGGACGATCAGCTTCCTAAACCGTGTGACCCTGGGAATTTAACACACGATCAGAGCAAACCGTCCCAGGACGTGAAAGGGACGTTACCAGAGCGTCCCCAGGACCCGGCGGCAGCGGAAGCAGCGGGGAGGCTGAGCCCGAGTCCCTTGTCACGTACCGAGGGCGACTGTGAGCCTGAGCCCTTGGGTCACAGTAGTCGGGACAGAGGCACGGATGTGGAGGGTCCCCCTCAAAGCACAGGGGTGTCCGCAGATGGGGTGCCCTCTCCGCAATTAGACAGGATCGCAGAAAACCGTCCAGAGGGGGTCCCCGAGCAAAGTAACGGTGAGAGAGGTGAAGACGGTAAGGCCGGGCAGAAGGTCCAGGAGGCTTGTCCAGTGCAGGAAAAAATCAGCAGCCTCAGAAAGGTGGACCGAGGACATTACCGCAGCCGGCGAGACCGGTCGTCCAGCGGCGAGCGCGCGCGGGCGAGCAGGGGCAGGACCGAGGAGCAGCATCGCCGGAAGCGGCCCCGCCATGGGCGGGAGCGGCCCCGGTCCGAGCGGCCCGAGCCCTGCGCCGCGGCCCCACACGCCCCCTGCCCCGGGTCCCTGGCCAGGTCCGGCCACCGGCGCTCCCGGAGCAGGGGGGCCCCCGACCAGGAGTGGGGCCGCTACCACCACGGCGAGGGCGAGCACGCCTGGGCCCGGGAGAAGCACTACCCAGACAGGATGCGCTGGGGGCGGTGCAGGTACCCCCACGACAGGTGCGCCCCGTACCCGGCCCGCGAGCCGCGGGACTGGAGGCCCTTCCACGCCGAGCGAGAGTACGACCGAGCCGGGCCCTACGGCGGCCGGCCCTACAAGGACCACTACCGAGGCCGGAAGGGCTACGAGCCGGCGGCCAAAGAGAGGGACCGGCACCGCTTCAGCAGCCCCCGGGCGGGCCTGGTCCACGCGCCCCCTCCGCACCCCGCTGACAAGTACGCCCATGACAAGGCTGCGCTGGGGGCTGAAGACAGCAGCTGTGACCTCGCCGGTCGGTTTCACGAACACAAAGACGTCAAGTCACGAAAACGGAGGTACGGTAGTGTAGGGAATGATGACAGTCACGTAGAAAAGAAAGCCTGGAGAAGCTTACAAAAGGATCCTTTAGAGGAGCCTAAAGTGAAGAAGCACAAAAAATCAAAGAAGAAAAAGAAATCCAAAGACAAACACCGAGACCGAGATTCCAGGCATCAGCAGGACTCAGACCTTTCGGTAGTGCACTCTGACGCTGACCTCCACAGACACAAGAAGAAGAAGAAGAAGAAGAAGAGGCACTCAAGGAAATCGGAGGACTTGGTTAGAGATTCGGAACCACACTTGCCCAAGGCCGCCAGCTGTGAGACTGTGGACCATTTCCGGAGAGCGGACAGCGCTTTCCCCCTCACAGACGGCCAGCCTCTGGAGGGTGTGGGACCTTTCCGTGAGAAAACAAAACATTTCTGGATGGAAACCAGGGATGACAGGTGTCATCTGTCTGACTGTGGCCAGGGTAAGAGGACATACTTGGAACTGCGAATATAG

Related Sequences

bmy_20986T0 Protein

Length: 1154 aa      View alignments
>bmy_20986T0
MMCTMQAHITQALSNPGDVIKPMFVINEMRRIARHFRFGSQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLVCQIFGGYLRSRVKCLNCKGVSDTFDPYLDITLEIKAAQSVNKALEQFVKPEQLDGENSYKCSKYDGCKKMVPASKRFTIHRSSNVLTLSLKRFANFTGGKIAKDVKYPEYLDIRPYMSQPNGEPIIYVLYAVLVHTGFNCHAGHYFCYIKASNGLWYQMNDSIVSTSDIRSVLSQQAYVLFYIRSHDVKNGGELTHSAHSPGQSSPRPNPPHLNGTGPLKETPSSSMSSPNGNSNVSRTGPVNASTSVQNWSVNRPSVIPEHPKKQKITISIHNKLPVCQGQSQPSLHSNSLESPDKPAPSSAIATSSAIQSTSSAPTMPASSEVTKQITLREACPEPVMNGRSKLSSGVLVPYGAESSEESDEEAKGLGKENGLGPPESARAPAPEAEDGGASPHELREPVALNGATSTDSDPKENGLPSDAATCQVQPALHSENPFSKANGLPGKLMPAPLPPLPEDKILETFKLSSKGKGSTDETSTTGTEEGPPQDPEAELEAGSSAPDSRENLELVTSLSSKFKKVLSPSDPSIKPTKEEVSENILAKPEEALPGINTFCNTNKDTLGDDQLPKPCDPGNLTHDQSKPSQDVKGTLPERPQDPAAAEAAGRLSPSPLSRTEGDCEPEPLGHSSRDRGTDVEGPPQSTGVSADGVPSPQLDRIAENRPEGVPEQSNGERGEDGKAGQKVQEACPVQEKISSLRKVDRGHYRSRRDRSSSGERARASRGRTEEQHRRKRPRHGRERPRSERPEPCAAAPHAPCPGSLARSGHRRSRSRGAPDQEWGRYHHGEGEHAWAREKHYPDRMRWGRCRYPHDRCAPYPAREPRDWRPFHAEREYDRAGPYGGRPYKDHYRGRKGYEPAAKERDRHRFSSPRAGLVHAPPPHPADKYAHDKAALGAEDSSCDLAGRFHEHKDVKSRKRRYGSVGNDDSHVEKKAWRSLQKDPLEEPKVKKHKKSKKKKKSKDKHRDRDSRHQQDSDLSVVHSDADLHRHKKKKKKKKRHSRKSEDLVRDSEPHLPKAASCETVDHFRRADSAFPLTDGQPLEGVGPFREKTKHFWMETRDDRCHLSDCGQGKRTYLELRI*