Sequence detailsbmy_20986 (Coding sequence)

Part of scaffold_2706 (SequenceType object (1))

For more information consult the page for scaffold_2706 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

USP42ENSTTRG00000005301 (Bottlenosed dolphin)

Gene Details

ubiquitin specific peptidase 42

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000005000, Bottlenosed dolphin)

Protein Percentage 84.15%
cDNA percentage 88.53%
Ka/Ks Ratio 0.57385 (Ka = 0.0666, Ks = 0.116)

USP42ENSBTAG00000000725 (Cow)

Gene Details

Ubiquitin carboxyl-terminal hydrolase 42

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000000967, Cow)

Protein Percentage 83.99%
cDNA percentage 87.64%
Ka/Ks Ratio 0.2695 (Ka = 0.0865, Ks = 0.321)

USP42 (Minke Whale)

Gene Details

ubiquitin specific peptidase 42

External Links

Gene match (Identifier: BACU012126, Minke Whale)

Protein Percentage 96.9%
cDNA percentage 98.03%
Ka/Ks Ratio 0.4921 (Ka = 0.0155, Ks = 0.0315)

Additional orthologs identified in other species via the OPTIC pipeline.

USP42 (Human)   Usp42 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 3462 bp    Location:107774..124175   Strand:+
Raw sequence 
>bmy_20986
ATGATGTGTACAATGCAAGCACATATTACCCAGGCACTCAGTAATCCTGGGGATGTTATTAAACCGATGTTTGTCATTAATGAGATGCGGCGCATAGCTAGGCACTTCCGCTTTGGAAGCCAAGAAGATGCCCATGAATTCCTTCAGTACACTGTTGATGCTATGCAAAAAGCATGCTTGAATGGCAGCAACAAATTAGACAGACACACCCAGGCTACCACACTCGTTTGTCAGATATTTGGAGGATACCTAAGATCTAGAGTCAAATGTTTAAATTGCAAAGGTGTGTCAGATACTTTTGATCCATATCTCGATATAACATTGGAGATAAAGGCTGCTCAGAGCGTCAACAAGGCGTTGGAGCAGTTTGTGAAGCCGGAACAGCTTGATGGAGAAAACTCGTACAAGTGCAGCAAGTATGACGGGTGTAAAAAGATGGTTCCAGCTTCAAAGAGGTTCACTATACACAGATCTTCTAATGTTCTTACACTTTCTCTGAAACGTTTTGCAAATTTTACTGGTGGAAAAATTGCTAAGGATGTGAAATATCCTGAGTATCTTGATATTCGACCGTATATGTCTCAGCCAAACGGAGAACCGATCATTTATGTTTTGTATGCAGTACTGGTACACACTGGTTTTAATTGCCATGCTGGCCATTACTTCTGCTACATAAAAGCTAGCAATGGCCTCTGGTACCAAATGAATGACTCCATCGTATCTACCAGTGATATTAGATCGGTACTCAGTCAACAAGCTTATGTTCTCTTTTATATCAGGTCCCACGATGTGAAAAATGGAGGTGAACTTACTCATTCCGCCCACAGCCCTGGCCAGTCCTCTCCCCGACCGAACCCACCTCATCTAAATGGGACGGGACCCTTGAAGGAAACGCCGAGCAGCTCCATGTCAAGTCCTAACGGGAATTCCAACGTCAGTAGGACTGGCCCTGTTAACGCCTCAACGTCTGTTCAGAACTGGTCAGTTAACAGGCCCTCAGTTATTCCAGAACATCCCAAGAAGCAGAAAATCACGATCAGTATTCACAACAAGTTACCTGTGTGCCAAGGTCAGTCTCAGCCTTCCCTTCACAGCAATTCTTTGGAGAGCCCCGACAAGCCTGCCCCCTCTTCTGCCATTGCCACCTCTTCTGCAATACAGTCTACCTCGAGTGCCCCCACGATGCCCGCGTCTAGTGAGGTAACAAAGCAGATCACCCTGAGGGAGGCCTGCCCTGAGCCTGTGATGAACGGCAGGTCCAAGCTGAGCTCCGGCGTGCTGGTCCCCTACGGCGCCGAGTCGTCCGAAGAGTCCGACGAGGAGGCGAAGGGCCTCGGCAAGGAGAACGGTCTCGGTCCCCCCGAGAGTGCGCGCGCCCCTGCTCCGGAGGCCGAAGATGGCGGGGCCTCTCCGCACGAGCTCCGAGAGCCCGTGGCTCTAAATGGTGCTACCAGTACGGACAGTGACCCGAAAGAAAACGGCCTGCCCTCGGATGCTGCCACCTGCCAAGTCCAGCCCGCTCTACACTCAGAAAACCCCTTTTCTAAGGCAAACGGTCTCCCTGGGAAGTTGATGCCTGCTCCTTTGCCACCTCTCCCAGAAGACAAAATCTTAGAGACCTTCAAACTCAGCAGCAAAGGGAAAGGCTCCACAGATGAGACGAGTACAACTGGGACAGAGGAGGGGCCTCCGCAGGACCCTGAGGCTGAGCTGGAGGCTGGCAGCTCCGCTCCCGATTCCCGTGAGAACCTGGAGCTGGTCACGAGCCTTAGCAGCAAATTCAAGAAGGTTTTGTCGCCCTCGGACCCCAGCATCAAACCTACCAAAGAAGAAGTCTCTGAAAACATTTTGGCGAAACCCGAGGAGGCTTTGCCGGGTATCAACACCTTTTGTAACACCAACAAGGATACCCTCGGGGACGATCAGCTTCCTAAACCGTGTGACCCTGGGAATTTAACACACGATCAGAGCAAACCGTCCCAGGACGTGAAAGGGACGTTACCAGAGCGTCCCCAGGACCCGGCGGCAGCGGAAGCAGCGGGGAGGCTGAGCCCGAGTCCCTTGTCACGTACCGAGGGCGACTGTGAGCCTGAGCCCTTGGGTCACAGTAGTCGGGACAGAGGCACGGATGTGGAGGGTCCCCCTCAAAGCACAGGGGTGTCCGCAGATGGGGTGCCCTCTCCGCAATTAGACAGGATCGCAGAAAACCGTCCAGAGGGGGTCCCCGAGCAAAGTAACGGTGAGAGAGGTGAAGACGGTAAGGCCGGGCAGAAGGTCCAGGAGGCTTGTCCAGTGCAGGAAAAAATCAGCAGCCTCAGAAAGGTGGACCGAGGACATTACCGCAGCCGGCGAGACCGGTCGTCCAGCGGCGAGCGCGCGCGGGCGAGCAGGGGCAGGACCGAGGAGCAGCATCGCCGGAAGCGGCCCCGCCATGGGCGGGAGCGGCCCCGGTCCGAGCGGCCCGAGCCCTGCGCCGCGGCCCCACACGCCCCCTGCCCCGGGTCCCTGGCCAGGTCCGGCCACCGGCGCTCCCGGAGCAGGGGGGCCCCCGACCAGGAGTGGGGCCGCTACCACCACGGCGAGGGCGAGCACGCCTGGGCCCGGGAGAAGCACTACCCAGACAGGATGCGCTGGGGGCGGTGCAGGTACCCCCACGACAGGTGCGCCCCGTACCCGGCCCGCGAGCCGCGGGACTGGAGGCCCTTCCACGCCGAGCGAGAGTACGACCGAGCCGGGCCCTACGGCGGCCGGCCCTACAAGGACCACTACCGAGGCCGGAAGGGCTACGAGCCGGCGGCCAAAGAGAGGGACCGGCACCGCTTCAGCAGCCCCCGGGCGGGCCTGGTCCACGCGCCCCCTCCGCACCCCGCTGACAAGTACGCCCATGACAAGGCTGCGCTGGGGGCTGAAGACAGCAGCTGTGACCTCGCCGGTCGGTTTCACGAACACAAAGACGTCAAGTCACGAAAACGGAGGTACGGTAGTGTAGGGAATGATGACAGTCACGTAGAAAAGAAAGCCTGGAGAAGCTTACAAAAGGATCCTTTAGAGGAGCCTAAAGTGAAGAAGCACAAAAAATCAAAGAAGAAAAAGAAATCCAAAGACAAACACCGAGACCGAGATTCCAGGCATCAGCAGGACTCAGACCTTTCGGTAGTGCACTCTGACGCTGACCTCCACAGACACAAGAAGAAGAAGAAGAAGAAGAAGAGGCACTCAAGGAAATCGGAGGACTTGGTTAGAGATTCGGAACCACACTTGCCCAAGGCCGCCAGCTGTGAGACTGTGGACCATTTCCGGAGAGCGGACAGCGCTTTCCCCCTCACAGACGGCCAGCCTCTGGAGGGTGTGGGACCTTTCCGTGAGAAAACAAAACATTTCTGGATGGAAACCAGGGATGACAGGTGTCATCTGTCTGACTGTGGCCAGGGTAAGAGGACATACTTGGAACTGCGAATATAG

Related Sequences

bmy_20986T0 SequenceType object (3)

Length: 1154 aa      View alignments
>bmy_20986T0
MMCTMQAHITQALSNPGDVIKPMFVINEMRRIARHFRFGSQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLVCQIFGGYLRSRVKCLNCKGVSDTFDPYLDITLEIKAAQSVNKALEQFVKPEQLDGENSYKCSKYDGCKKMVPASKRFTIHRSSNVLTLSLKRFANFTGGKIAKDVKYPEYLDIRPYMSQPNGEPIIYVLYAVLVHTGFNCHAGHYFCYIKASNGLWYQMNDSIVSTSDIRSVLSQQAYVLFYIRSHDVKNGGELTHSAHSPGQSSPRPNPPHLNGTGPLKETPSSSMSSPNGNSNVSRTGPVNASTSVQNWSVNRPSVIPEHPKKQKITISIHNKLPVCQGQSQPSLHSNSLESPDKPAPSSAIATSSAIQSTSSAPTMPASSEVTKQITLREACPEPVMNGRSKLSSGVLVPYGAESSEESDEEAKGLGKENGLGPPESARAPAPEAEDGGASPHELREPVALNGATSTDSDPKENGLPSDAATCQVQPALHSENPFSKANGLPGKLMPAPLPPLPEDKILETFKLSSKGKGSTDETSTTGTEEGPPQDPEAELEAGSSAPDSRENLELVTSLSSKFKKVLSPSDPSIKPTKEEVSENILAKPEEALPGINTFCNTNKDTLGDDQLPKPCDPGNLTHDQSKPSQDVKGTLPERPQDPAAAEAAGRLSPSPLSRTEGDCEPEPLGHSSRDRGTDVEGPPQSTGVSADGVPSPQLDRIAENRPEGVPEQSNGERGEDGKAGQKVQEACPVQEKISSLRKVDRGHYRSRRDRSSSGERARASRGRTEEQHRRKRPRHGRERPRSERPEPCAAAPHAPCPGSLARSGHRRSRSRGAPDQEWGRYHHGEGEHAWAREKHYPDRMRWGRCRYPHDRCAPYPAREPRDWRPFHAEREYDRAGPYGGRPYKDHYRGRKGYEPAAKERDRHRFSSPRAGLVHAPPPHPADKYAHDKAALGAEDSSCDLAGRFHEHKDVKSRKRRYGSVGNDDSHVEKKAWRSLQKDPLEEPKVKKHKKSKKKKKSKDKHRDRDSRHQQDSDLSVVHSDADLHRHKKKKKKKKRHSRKSEDLVRDSEPHLPKAASCETVDHFRRADSAFPLTDGQPLEGVGPFREKTKHFWMETRDDRCHLSDCGQGKRTYLELRI*