Part of scaffold_2828 (Scaffold)

For more information consult the page for scaffold_2828 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

THBS1 ENSTTRG00000000032 (Bottlenosed dolphin)

Gene Details

thrombospondin 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000000028, Bottlenosed dolphin)

Protein Percentage 98.43%
cDNA percentage 97.88%
Ka/Ks Ratio 0.11111 (Ka = 0.0075, Ks = 0.0679)

THBS1 ENSBTAG00000002006 (Cow)

Gene Details

thrombospondin-1 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000002600, Cow)

Protein Percentage 97.21%
cDNA percentage 94.42%
Ka/Ks Ratio 0.06035 (Ka = 0.0141, Ks = 0.2337)

THBS1  (Minke Whale)

Gene Details

thrombospondin 1

External Links

Gene match (Identifier: BACU008544, Minke Whale)

Protein Percentage 96.88%
cDNA percentage 96.26%
Ka/Ks Ratio 0.08931 (Ka = 0.0051, Ks = 0.0574)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 3807 bp    Location:46385..61530   Strand:+
>bmy_21142
GCACTCGGGCCGGCAGTCGAGTGCCCACCCCGGCGAGCTCTCCCCGCGCAGCCTCCGATCCCTCGGCCTCCGGGCGTACCGCCCTGCCCGCGCTTCTCCAGCGCTCGGTCCCGTCGCTGCGCCTTCGTCGCCGGCCCCGGCCGCTGCACCCGTGTCCACACAGGCTCCCTGCTGGGCACAACCAGCTCCACCATGGGGCTGGCCTGGGGACTCTGTGTCCTGTTCCTGTGGCACGTGTGCGGCTCCAACCGCATTCCAGAGTCTGGGGGAGACAACAGCGTGTTTGACATCTTTGAACTCACGGGGGCTGCCCGCAAGGGTTCTGGGCGCCGACTGGTGAAGGGTCCTGACCCTTCCAGCCCAGCTTTCCGCATCGAGGATGCCAACCTGATCCCCCCTGTGCCTGACGACAAGTTCCAAGACCTAGTGGATGCTGTGCGGGCGGAGAAAGGTTTCCTCCTCCTGGCCTCCCTGAGGCAAATGAAGAAGACCCGGGGCACGCTGCTGGCCGTGGAGCGGAAAGACCACTCTGGCCAGGTCTTCAGCGTGGTCTCCAATGGCAAGGCGGGCACCCTGGACCTGAGCCTGACCGTGCAGGGGAAGCAGCATGTGGTGTCAGTGGAAGAAGCACTCCTGGCGACCAGCCAGTGGAAGAGCATCACCCTGTTTGTGCAGGAGGACAGGGCCCAGCTGTACATCGACTGTGAGAAGATGGAGAATGCTGAGCTGGACGTTCCCATCCAAAGCATCTTCACCAGGGACCTGGCCAGCATTGCCAGACTCCGCATCGCCAAAGGAGGTGTCAATGACAATTTCCAGGGCGTGCTGCAGAATGTGAGATTTGTCTTTGGAACCACACCAGAAGACATCCTCAGGAACAAAGGCTGCTCCAGCTCTACCAGTGTCCTTCTCACCCTTGACAACAATGTGGTGAACGGTTCCAGCCCTGCCATCCGCACCAACTACATTGGCCACAAGACAAAGGATCTGCAAGCCATCTGCGGCATCTCCTGTGACGAGCTATCCAGCATGGTCCTGGAGCTCAGGGGCCTGCGCACCATCGTGACCACGCTGCAGGACAGCATCCGCAAAGTGACTGAAGAGAACAAAGAGCTGGTCAATGAGCTGAGGAGGCCCCCGCTCTGCTACCACAACGGAGTCCAGTACAGGAATAACGAGGAGTGGACGGTGGACAGCTGCACTGAGTGTCGCTGCCAGAACTCAGTTACCATCTGCAAAAAAGTGTCCTGCCCAATCATGCCCTGCTCCAATGCCACAGTTCCTGATGGAGAATGCTGCCCGCGGTGTTGGCCCAGCGACTCTGCGGACGATGGCTGGTCCCCATGGTCTGAGTGGACCTCTTGCTCTGTGACGTGTGGCAACGGAATCCAGCAGCGCGGCCGCTCCTGCGACAGCCTCAACAACAGATGCGAGGGCTCCTCCGTGCAGACACGGACCTGCCACATTCAGGAGTGTGACAAGAGATTCAACGGAGGCTGGGGACCCTGGTCACCATGGGACATCTGTTCCGTCACCTGTGGAGGAGGGGTGCAGAAACGTAGCCGGCTTTGCAACAACCCCACACCCCAGTTTGGAGGCAAGGACTGCGTTGGTGATGTGACAGAAAACCAGATCTGCAACAAGCAGGACTGCCCCATTGATGGATGCCTGTCCAATCCCTGCTTTGCTGACGTCAAGTGTACCAGCTACCCTGATGGCAGCTGGAAGTGTGGTGCTTGTCCCCCGGGCTACAGCGGAAATGGCATCCGGTGCAAAGATGTTGATGAGTGCAAAGAAGTCCCTGATGCCTGCTTCAACCACAACGGAGAGCACAGGTGTGAGAACACAGACCCCGGCTACAACTGCCTGCCCTGCCCGCCACGCTTCACTGGCTCGCAGCCCTTTGGCCGGGGCGTGGAACATGCCACCACCAACAAACAGGTGTGCAAGCCCCGCAACCCCTGCACGGACGGCACACACGACTGCAACAAGAATGCCAAGTGCAACTACCTGAGCCACTACAGTGACCCCATGTACCGCTGCGAGTGCAAGCCCGGCTACGCCGGCAACGGCATCATCTGTGGGGAAGACACAGACCTGGACGGCTGGCCCAACGAGGACCTGGTGTGCGTGGCCAATGCAACTTACCACTGCAAAAAGGATAATTGCCCCAACCTTCCCAACTCAGGGCAGGAAGACTATGACAAGGACGGAATCGGCGATGCCTGTGACGATGATGATGACAATGATAAAATTCCAGATGACAGGGACAACTGCCCGTTCCATTACAACCCAGCCCAGTACGACTATGACAGAGACGACGTGGGAGACCGCTGTGACAACTGCCCCTACAACCACAACCCAGACCAGGCTGACACGGACAACAACGGGGAAGGAGACGCCTGCGCGGCAGACATTGATGGGGACGGTATCCTCAATGAACGGGACAACTGCCAGTATGTCTACAATGTGGACCAGAGAGACACTGACATGGATGGGGTTGGAGATCAGTGTGACAACTGCCCCCTGGAACACAATCCAGATCAGCTCGACTCTGACTCGGACCGCATTGGAGACACCTGTGACAACAATCAGGACATTGATGAAGATGGCCACCAGAACAACCTGGACAACTGTCCCTACGTGCCCAACGCCAACCAGGCCGACCATGACAAGGACGGCAAGGGCGATGCCTGCGACCAYGACGATGACAATGACGGCATTCCTGATGACAGGGACAACTGCAGGCTCGTGCCCAATCCTGACCAGAAGGATTCTGATGGTGATGGTCGAGGTGATGCTTGCAAAGATGATTTTGACCAGGACAACGTGCCAGACATCGATGACATCTGTCCCGAAAACGTTGATATCAGTGAGACCGATTTCCGCCGATTCCAGATGATTCCTCTGGATCCCAAAGGGACATCCCAAAATGACCCTAACTGGGTTGTACGCCATCAGGGTAAAGAACTCGTCCAGACTGTCAACTGTGATCCTGGACTTGCTGTAGGTTATGATGAGTTTAACGCTGTGGACTTCAGTGGCACCTTCTTCATCAACACCGAGAGGGACGATGACTATGCCGGATTTGTCTTTGGCTATCAGTCCAGCAGCCGCTTCTATGTTGTCATGTGGAAGCAAGTCACCCAGTCCTACTGGGACACCAACCCCACAAGGGCTCAGGGATACTCCGGCCTTTCTGTGAAGGTCGTGAACTCCACCACGGGGCCTGGCGAGCACCTGCGGAATGCCCTGTGGCACACAGGAAACACCCCCGGCCAGGTACGCACGCTGTGGCATGACCCTCGTCACATAGGCTGGAAAGATTTCACCGCCTACAGATGGCGTCTGAGCCACAGGCCAAAGACGGGTTTCATTAGAGTGGTGATGTATGAAGGGAAGAAAATCATGGCCGACTCAGGACCCATCTACGACAAAACCTATGCTGGCGGTAGGCTAGGGTTGTTCGTCTTCTCTCAAGAAATGGTGTTCTTCTCTGACCTGAAATATGAATGCAGAGTGATTACTTATAAGCTCTCACTGAGTCTAGCATTGGGTCTCCTAAAAAACAGATTCCTAATCATCAAACTGTTGATGAAAAGACTGATCATAACCATTGCTGGTATTGCACCTTCTGGAACCATGGGCTTAAGAAAACCCCCAGGATCACTCCTCCCTGCCTGCCTTTGCTCTCTGCTTGCATCAGTGTGGACTCTTAGAGCATGTGACTTGCCTCAAGAAAATGCAGTTTTCCAGATCAGACTCAGCATTCAGCCTCTGAATGAGAAGAATCTTCCAAGGATATAA

Related Sequences

bmy_21142T0 Protein

Length: 1269 aa      View alignments
>bmy_21142T0
ALGPAVECPPRRALPAQPPIPRPPGVPPCPRFSSARSRRCAFVAGPGRCTRVHTGSLLGTTSSTMGLAWGLCVLFLWHVCGSNRIPESGGDNSVFDIFELTGAARKGSGRRLVKGPDPSSPAFRIEDANLIPPVPDDKFQDLVDAVRAEKGFLLLASLRQMKKTRGTLLAVERKDHSGQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEALLATSQWKSITLFVQEDRAQLYIDCEKMENAELDVPIQSIFTRDLASIARLRIAKGGVNDNFQGVLQNVRFVFGTTPEDILRNKGCSSSTSVLLTLDNNVVNGSSPAIRTNYIGHKTKDLQAICGISCDELSSMVLELRGLRTIVTTLQDSIRKVTEENKELVNELRRPPLCYHNGVQYRNNEEWTVDSCTECRCQNSVTICKKVSCPIMPCSNATVPDGECCPRCWPSDSADDGWSPWSEWTSCSVTCGNGIQQRGRSCDSLNNRCEGSSVQTRTCHIQECDKRFNGGWGPWSPWDICSVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVTENQICNKQDCPIDGCLSNPCFADVKCTSYPDGSWKCGACPPGYSGNGIRCKDVDECKEVPDACFNHNGEHRCENTDPGYNCLPCPPRFTGSQPFGRGVEHATTNKQVCKPRNPCTDGTHDCNKNAKCNYLSHYSDPMYRCECKPGYAGNGIICGEDTDLDGWPNEDLVCVANATYHCKKDNCPNLPNSGQEDYDKDGIGDACDDDDDNDKIPDDRDNCPFHYNPAQYDYDRDDVGDRCDNCPYNHNPDQADTDNNGEGDACAADIDGDGILNERDNCQYVYNVDQRDTDMDGVGDQCDNCPLEHNPDQLDSDSDRIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDACDHDDDNDGIPDDRDNCRLVPNPDQKDSDGDGRGDACKDDFDQDNVPDIDDICPENVDISETDFRRFQMIPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGYDEFNAVDFSGTFFINTERDDDYAGFVFGYQSSSRFYVVMWKQVTQSYWDTNPTRAQGYSGLSVKVVNSTTGPGEHLRNALWHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGFIRVVMYEGKKIMADSGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRVITYKLSLSLALGLLKNRFLIIKLLMKRLIITIAGIAPSGTMGLRKPPGSLLPACLCSLLASVWTLRACDLPQENAVFQIRLSIQPLNEKNLPRI*