Part of scaffold_2798 (Scaffold)

For more information consult the page for scaffold_2798 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

BRCA1 ENSTTRG00000011743 (Bottlenosed dolphin)

Gene Details

breast cancer 1, early onset

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011139, Bottlenosed dolphin)

Protein Percentage 93.88%
cDNA percentage 97.08%
Ka/Ks Ratio 1.00253 (Ka = 0.0292, Ks = 0.0291)

BRCA1 ENSBTAG00000022520 (Cow)

Gene Details

breast cancer type 1 susceptibility protein homolog

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000011616, Cow)

Protein Percentage 81.49%
cDNA percentage 90.42%
Ka/Ks Ratio 0.76681 (Ka = 0.0969, Ks = 0.1264)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 5547 bp    Location:166848..108057   Strand:-
>bmy_21173
ATGGATTTTTCTGCGGATCACGTTGAAGAAGTACAAAATGTCCTTAATGCTATGCAGAAAATCTTAGAGTGTCCAATCTGTCTGGAGTTGATCAAAGAGCCTGTTTCCACAAAGTGTGATCACATATTTTGCAAATTTTGTATGCTGAAACTTCTCAACCAGAAGAAAGGGCCTTCACAGTGTCCTTTGTGTAAGAATGATATAACCAGAAGAAGCCTACAAGAAAGTACAAGATTTAGTCAGCTTGTTGAAGAGCTATTGAAGGTCATTCATGCTTTTGAGCTTGACACAGGATTGCAGATTGCAAACAGTTATAACTTTTCAAAAAAGGAAAATAACTCTCCTGAGCGTCTGAAGGAGGAAGTTTCTATCATTCAAAGTATGGGCTACCGAAACCGGGCCAAAAGACTTCGACAGAGTGCACCTGAAAATCCTACCTTGCAGGAAACCAGTCTTAGTGTCCAGCTCTCTAACCTTGGAAATGTGAGATCTCTGAGGACAAAGCAGCAGATACAACCTCAGAAAAAGTCTGTCTACATTGAATTGGGATCTGATTCTTCTGAAGATACAGTTAATAAGGCCAGTTATTGCAGTGTAGGAGACCATGAATTGTTAGAAATCACCCCTCAAGGAGCCAAGGCTGAAGCCACTGCTTGTGAGTTTTCTGAGAAGGACATAACAAAGGCTGAACATCATCAATTCAGTAATAAAGATTTGACCACCACTGAGAAGCATGAAACTGAGAAGCATCCAGAAAAGTATCAGGGTATTTCTGTTTCAAACTTGCATGTGGAGCCATGTGGCACAGATACTCATGCCAGCTCATTACAACATGAAAACAGCAGTTTATTACTCACTAAAGACAGAATGAATGTAGAAAAGGCTGAATTCTGTAATAAAAGCAAACAGCCTGTCTTAGCAAAGAGCCAACAGAGCAGATGGGCTGAAAGTAAGGACACATGTAATGATAGGCAGACTCCCAGTACAGAGAAAAAGGTAGTTCTGAATGCTGATCCCCTATATGGGAGAAAAGAACTGAATAAGCAGAAACCTGCATGCTCTGACAGTCCTAGAGATTCCCAAGAGTTTCCTTGGATAACAGTGAATAGTAGCATACAGAAAGTTAATGAATGGTTTTCCAGAAGTGATGAAATGTTAACTTCTAACGACTCACGTGATGGGGGATTTGAATCAAACACTGAAGTAGCTTGTGCAGTGGAAATTCCAAAGGAAGTTGATGGATATTTGGGTTCTTCAGAGAAAATAGACTTAATGACCAGTGATCCTCATGGTGCTTTAATACGTGAAAGTGAAAGAGTCCACTCCAAACCAGTAGAGAGTAATATTGAAGATAAAATATTTGGGAAAACCTATCGGAGGAAGGCAAGCCTCCCTAACTTGAGCCACATAGCTGAACATCTAATTATAGGAGCATCTACTGYAGAACCTCAGATAACACAAGAGCGCCCCCTCACAAATAAACTAAAGCGTAAAAGGAGAAGTACATCAGGCCTTCATCCTGAGGATTTTATCAAGAAAGTCGATTTGGCAGTTATTCCAAAGACYCCTGAAAAAATAACTGAGGGAACTGACCAAACAGAGCAGAATGGTCATGGGATGCATATTACTAGCAATGGTCCTGAGACTGAAATGAAAGGTGATTATGTTCAGAAAGAGAAAAATGCTAACCTAACAGAATCATTGGAAAAACAATCTGCTTTCAGAACTAAGCCTGAACCTATAAGCAGCAGTATAAGCAATATGGAACTAGAATTGAATATCCRTAGTTCAAAAGCACCTAAAAATAGGCTGAGGAGGAAGTSCTCTACCAGGAAGATTCATGCACTTGAACTAGTAGTCAGTAGAAACCCAAGCCCACCTAATCATACTGAACTACAAATTGATAGTTGTTCCAGCAGTGAAGAGATGAAGAAAAAACATTCCAGCCAAATGCCAGTCAGGCATGGCAAAAAGCTTCAATTCATGGGAGATAAAACACCTACAACTGGAGCCAAGAAGAGTAACAAGCCACACGAACAAATAAATAAAAGACTTGCCAGTGACACTTATCCAGAACTAAATTTAACAAACATACCTGTTTTTTTTACTCACTGTTCTAGTTCTAATAAACTTCAAGAGTTTGTTAATCCTAGCCTTCAAAGAGAGGAGAACCTAGGAAAAATTCAAGTGTCGAATAGTACCAAAGACCCCAAAGATCTGACATTAAGTGGAGGAAAAGGTTTGCAAATTGAAAGATCTGTAGAGAGTACCAGTATTTCCTTGGTACCTGATACTGATTATGGCACTCAGGATAGTATCTCATTACTGGAAGCTGACACCCTAGGGAAGGCAAAGACAGCACCAAATCAACATGTGAGTCTGTGTGCAGCAATTGAAAGCCCCAAGGAACTTATCCATGGTTGTTCTAAAGATATTAGAAACGACACAGAGGACTTTCAGGATCCACTGGGACATGACGTTAACCACATTCAGGAGGGGAGCATAGAAATGGAAGAGAGTGAACTTGATACACAGTATTTGCAGAATATGTTCAAGGTTTCAAAGCGTCAGACGTTTGCTCTGTTTTCAAATCCAGAAAATCCAGAGAAGGAATGTGCAACAGTCTGTGCCCACTCTGGGTCCTTAAGGGAACAAAGTCCAAGAGTCCCTCTTGAATGCAGACAAAAAGAAGAAAATCAGGGAAAGAGTGAGTCTAAAATCAAGCATGTGCGGGCAATTAATACAACTGTGGACTTCCCTGTGGCTGGTCAAAAAGATAAGAAGCTGAGCGATCATGCCAAACGTAGCCCAAAAAGAGTAACTAGGCTTTGTCAGTCATCACAGTTCAGAGGCAACAAAACTGAGCTCGTTATTGCAAATAAACATGGGATTTCACAAAACCCATATCTTATACCATCACTTTCTCCCATCAGGTCATCTGTTAAAACTATATGTAAGAAAAACCTGTCAGAGGAAATGTTTGAGGAACCTGTAATGTCACCTGAAAGAGCAATGGAAAACGAGAGCATCATTCAAAGTACAGTGAGCACAATTAGCCAAAATAACATTCGAGAAAGCACTTTTAAAGAAGTCAGCTCAAGCAGTATTAATGAAGTAGGTTCCAGTACTAATGAAGTAGGCTCTAGTATTAATGAAGTAGGTTCCAGTGGTGAAAACATTCAAGCAAAACTAGATGGAAACAGAGGACCTAAATTAAGTGCTTTGCTCAGATTAGGTCTTATGCAACCCGAAGTCTATAAGCAAAGTCTTCCTGTAAATAACTGTCAACTTCCTGAAATAAAAAGGCAAGGAGAAAATGAAGGCACACTTCAGGCTGTTAATGCAGATTTCTCCCCATGTCTAATTTCAGATAACCTAGAACAACCTATGGGAAGAAGCCATGCTTCTCAGGTTTGTTCTGAGACACCTGATGACTTGTTAAATGATGACAAAATAAAGGAAAATAGTAACTTTGCTGAAAGTGACATTAGGGAAAGATCTGCTGTTTTTAGCAAAAGTGTCCAAAAAGGAGAATTCAGAAGGAGCCCTGGCCTTTTACCCCATCATACGTGTTTGGCTCAGGGTCACGAAAGAGGGGCTGAGTCCTCAGAAGAGRATGTGTCTAGTGAGGATGAAGAGCTTCCCTGCTTCCAACACTTACTTGGTAAAGTAACCAATACACTGTCTCCATCTACCAGACATAATGCTGTTGCCACAGAGGGTCTATCTAAGGAAACAGAGGAGAACCTAATATCATTGAAGAATAGCTTAAATGACTGCAGTGACCAGGTAACATCGGCAAAGGCATCCCAGGAACATCACCTTCATGAGGAAGCGAGATGTTCTAATAGCTTATTTTCTTCACGGTGCAGTGCAGTGGAAGACTTGACCGCTAATACAAACACCCAGGATCCTTTCTTGATGTTTGATCTGCTCTCCAAACAAGTGGGGCATCAGTCTGAAAACCAGGAAGTTCCGAGTGACAAGGAATTGGTTTCAGATGATGACGAAAGGGAAACTGGCTTGGAAGACGATAATCGCCAAGAAGAGCAGAGTGTGGATTCAGACTTAGGTGAAGCAGCATCCGAGTATGAGAGTGAAACAAGCCTCTCTGAAGACTGTTTGGGGCTGTCCTCTCAGAGCGATATCTTAACCACTCAGCAGAGGGATACCATGCAAGATAACCTGCTAAAGATCCAGCAGGAAATGGCCGAACTGGAAGCTGTGTTAGAGCAGCACGGGAGCCAGCCTTCTCACAGCTCCCCTTCCCTCATAGCCGATTCTTGTGCCCCGGAGGACCTGCTAAATCTGGAACAAAACACATCAGAAAGAGCAGTATTAACTTCAGAGAAAAGTAGTGAATATCCTATAAGCCAGAATCCAGAAAGCCTTTCTGCTGACAAGTTTCAAGTATCTCCGGATTGTTCCACCAGTAAAAATAAAGAACCAGGAATGGAAAGGTCTTCCCCTTCTAAATCGCAGTTGTCAGATAATAGGTGGTATATGCACAGCCACTCAAGGAGTCTTCAGAACAGAAACTGCCCACCTCAAAAGGAGCTTGAGGTTGTTGATGTGGAGGAGCAACAGCTGACTGAGTCTGAGGCCCAAGATTTAACGGAGCAGTCTTATTTGCCAAGACAAGATCTAGAATCTGGAATCAGCCTCTTCTCTGATGACCCTGAGTCTGATCCCTCTGAAGACAGAGCCCCAGAGCCAGCTCACGTTTGCAGCATGCCACCCTCAGCCTCTGCACTGAAATTACCCCAATTTCAAGTAGAAGAATCTGCCAGGAGTCCGGCTGCTGCTCATACTACTAATACTGCAGGGTATAATGTGAGGGAAGAAAGTGTGAGCAGAGAGAAGCCAGAGTTGATATCTTCAACACAAAGAGGCAACAAAAGAATTTCTATGGTGGCATCAGGCTTGACCCCAAAAGAATTTGTGCTTGTGCACAAGTTTGCCAGAAAACATCACATCACTTTAACTAATCTAATTACTGAAGAGACTACTCATGTCATTATGAAAACAGATGCTGAGTTTGTGTGTGAACGGACACTGAAATATTTTCTGGGAATTGCAGGAGGAAAATGGGTMGTTAGCTATTTTTGGGTGACCCAGTCTATTAAAGAAAGAAGGATGCTGGATGAGCATGATTTTGAAGTCAGAGGCGATGTTGTCAATGGAAGAAACCATCAAGGCCCAAAGCGAGCAAGAGAATCCCAGGACAGGAAGATCTTCAAGGGCTTAGAAATCTGTTGCTATGGACCCTTTACCAATATGCCCACAGATCAACTAGAGTGGATGGTGCATCTGTGTGGGGCTTCTGTGGTGAAGGAGCCCTCATCATTCACCCTCAGCCGGGGTACTCAACCAATTGTGGTCGTGCAGCCGGATGCCTGGACAGAGGGCGGTGGCTTCCATGTCATCGGGCAGATGTGTGAAGCACCTGTGGTGACCCGAGAGTGGGTATTGGACAGCGTAGCCCTCTACCAGTGCCAGGAGCTGGACACCTACCTGATACCCCAGGTCCCCCAGAGCTGCTGCTGA

Related Sequences

bmy_21173T0 Protein

Length: 1849 aa      View alignments
>bmy_21173T0
MDFSADHVEEVQNVLNAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITRRSLQESTRFSQLVEELLKVIHAFELDTGLQIANSYNFSKKENNSPERLKEEVSIIQSMGYRNRAKRLRQSAPENPTLQETSLSVQLSNLGNVRSLRTKQQIQPQKKSVYIELGSDSSEDTVNKASYCSVGDHELLEITPQGAKAEATACEFSEKDITKAEHHQFSNKDLTTTEKHETEKHPEKYQGISVSNLHVEPCGTDTHASSLQHENSSLLLTKDRMNVEKAEFCNKSKQPVLAKSQQSRWAESKDTCNDRQTPSTEKKVVLNADPLYGRKELNKQKPACSDSPRDSQEFPWITVNSSIQKVNEWFSRSDEMLTSNDSRDGGFESNTEVACAVEIPKEVDGYLGSSEKIDLMTSDPHGALIRESERVHSKPVESNIEDKIFGKTYRRKASLPNLSHIAEHLIIGASTXEPQITQERPLTNKLKRKRRSTSGLHPEDFIKKVDLAVIPKTPEKITEGTDQTEQNGHGMHITSNGPETEMKGDYVQKEKNANLTESLEKQSAFRTKPEPISSSISNMELELNIXSSKAPKNRLRRKXSTRKIHALELVVSRNPSPPNHTELQIDSCSSSEEMKKKHSSQMPVRHGKKLQFMGDKTPTTGAKKSNKPHEQINKRLASDTYPELNLTNIPVFFTHCSSSNKLQEFVNPSLQREENLGKIQVSNSTKDPKDLTLSGGKGLQIERSVESTSISLVPDTDYGTQDSISLLEADTLGKAKTAPNQHVSLCAAIESPKELIHGCSKDIRNDTEDFQDPLGHDVNHIQEGSIEMEESELDTQYLQNMFKVSKRQTFALFSNPENPEKECATVCAHSGSLREQSPRVPLECRQKEENQGKSESKIKHVRAINTTVDFPVAGQKDKKLSDHAKRSPKRVTRLCQSSQFRGNKTELVIANKHGISQNPYLIPSLSPIRSSVKTICKKNLSEEMFEEPVMSPERAMENESIIQSTVSTISQNNIRESTFKEVSSSSINEVGSSTNEVGSSINEVGSSGENIQAKLDGNRGPKLSALLRLGLMQPEVYKQSLPVNNCQLPEIKRQGENEGTLQAVNADFSPCLISDNLEQPMGRSHASQVCSETPDDLLNDDKIKENSNFAESDIRERSAVFSKSVQKGEFRRSPGLLPHHTCLAQGHERGAESSEEBVSSEDEELPCFQHLLGKVTNTLSPSTRHNAVATEGLSKETEENLISLKNSLNDCSDQVTSAKASQEHHLHEEARCSNSLFSSRCSAVEDLTANTNTQDPFLMFDLLSKQVGHQSENQEVPSDKELVSDDDERETGLEDDNRQEEQSVDSDLGEAASEYESETSLSEDCLGLSSQSDILTTQQRDTMQDNLLKIQQEMAELEAVLEQHGSQPSHSSPSLIADSCAPEDLLNLEQNTSERAVLTSEKSSEYPISQNPESLSADKFQVSPDCSTSKNKEPGMERSSPSKSQLSDNRWYMHSHSRSLQNRNCPPQKELEVVDVEEQQLTESEAQDLTEQSYLPRQDLESGISLFSDDPESDPSEDRAPEPAHVCSMPPSASALKLPQFQVEESARSPAAAHTTNTAGYNVREESVSREKPELISSTQRGNKRISMVASGLTPKEFVLVHKFARKHHITLTNLITEETTHVIMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERRMLDEHDFEVRGDVVNGRNHQGPKRARESQDRKIFKGLEICCYGPFTNMPTDQLEWMVHLCGASVVKEPSSFTLSRGTQPIVVVQPDAWTEGGGFHVIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQVPQSCC*