Part of scaffold_2837 (Scaffold)

For more information consult the page for scaffold_2837 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LRIF1 ENSTTRG00000016816 (Bottlenosed dolphin)

Gene Details

ligand dependent nuclear receptor interacting factor 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015944, Bottlenosed dolphin)

Protein Percentage 97.82%
cDNA percentage 98.64%
Ka/Ks Ratio 0.36805 (Ka = 0.0101, Ks = 0.0275)

BT.46048 ENSBTAG00000012659 (Cow)

Gene Details

LOC539067 protein; Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000055840, Cow)

Protein Percentage 92.52%
cDNA percentage 95.19%
Ka/Ks Ratio 0.36045 (Ka = 0.0365, Ks = 0.1013)

LRIF1  (Minke Whale)

Gene Details

ligand dependent nuclear receptor interacting factor 1

External Links

Gene match (Identifier: BACU002717, Minke Whale)

Protein Percentage 99.46%
cDNA percentage 99.55%
Ka/Ks Ratio 0.22233 (Ka = 0.0025, Ks = 0.0111)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2208 bp    Location:100460..105841   Strand:+
>bmy_21217
ATGTACCAAGTAGTTCAGACGATTGGCTCGGATGGAAAAAATCTTCTGCAATTACTTCCAATTCCTAATTCCTCTGGAAATCTTATACCACTAGTTCAATCTACAGTCATGTCTGATGCTTTGAAAGGGAATACAGGAAATCCAGTTCAAGTTACTTTTCAGACTCAGATTTCCAGCTCTTCCACAAGTGCATCAGTTCAATTGCCCATTTTTCAGCCAGCCAGTTCTTCAAACTATTTTCTTACAAGAACAGTAGACACAGCAGAAAAAGTTAGAGTTACTTCTGTGGGAACTGAAAATTTTACCTCATCAGTTTCTAAAGTTCAGAGTCATGGTGTGAAAATTGATGGACTCACCATGCAAACGTTTGCTGTTTCTCCCTCCTCAACACAAAATGATTCATCTTATATTTTAGTAAATACCCAGAGTCTTCCAATGACTGTGAAGTCTCCGGTTTTGCCTTCTGGGCATCATTTACAGATTCCAGCCCATGCTGAAGTGAAATCTGTACCAGCGTCTTCATTGCCTCCTTCAGTTCAGCAAAAGATACTTGCAACTGCAACCACAAGTACCTCAGGAACAGTTGAGGCCTCCCAAATACCAACTGTTATTTATGTATCTCCTGTAAATACAGTGAAAAATGTAGTTACCAAGAACTTTCAAAACATTTACCCAAAACCTGTTACAGAAATAGCAAAGCCAATGATACTAAATACCACACAGATTCCAATGAATGTTGCTAAAGAGACACAATTAAAAGGTGGTCAGCATTCTCAAGCTGCTCCAGTGAAATGGATTTTTCAAGAAAATCTACAGCCTTGCACTCCATCTCTTGTTCCTGTTAAATCTTCAAATAATGTGGCTTCAAAGATTTTAAAAACTTTTGTAGATAGGAAAAGTTTGGGAGATAATACTGTGAATATGCCACCATTGAGTACCATCAGTCCTGGTGGGACACAATCCAAAAGTATGCCTATTAAAGATAATGCTTTGGTTATGTTTAATGGGAAAGTCTATCTATTGGCTAAAAAGGGGACAGATGTTTTGCCATCACAAATTGACCAAGAGAATTCTGTTTCTCCTGATATTCCACCAAGAAAAGATACATCACAGATAGTAAGTTCAAGTCCAGTCACAGAAATATCTAGAGAGGTTGTAAATATTGTTTTGGCTAAAAGTAAATCTTCCCAGATGGAGACAAAATCACTTTCAAATACCCAGCTTGCTTCCATGGCCAATCTAAGTGCAGAGAAGAATAAGAAAGTGGAGAAACCATCTCTTTCTACCCCAAACCCACATAGTATGAACCAATCCATTAACTACTTAAAGCAGAGTAAGACTTTATTCTCAAAGCCAGACTTTCCAGATGGATTTAGTACAGGACAAAATTCCCCCAGAAAAGGAAATATCATCCACAGCATAGAGAAAATAAGTTCCTCTGTTGATGCAACAACTGTTACTTCACAACAGTGTGTTTTCAGAGACCAAGAACCAAAGATCCAGAATGAGATGGCATCAACATTAGAAAAAGTTACTCAAGAAAGAAATGACAAGAACAATTCCCAAGGAAGAAGCAATAAGGCCTCATATCTGAACAATGATGCTGAACTTAGAAAGATATTTGGTCTCACTAAAGATTTGAGAGTGTGCCTTACTCGGATTCCTCACCATTTGGGCTCTGGAGGAGGTTTTGATTCCTTTAGCTGTTTGGTGAAAAGTGATACTTACAAAGAAACAGAGTTTATAGTGAAGGAGGAAGGCAGAAAACAGGGTTTTGATAAGAAAAGAAAAGCAAAAACCAATAAGAAGATGGATCACACAAAGAAGAGAAGAACTGAGAGTGTTTATAACACAACTGTAAATGGAGGAACTAATGTCACCAGTTCCCAACTCGTTAGCAGTATTTTACCAACTTCAAATGTATCACACCATAACATTCTCAGAGGCCGCAACAAAACCAGGGAAGAAAAGAGATCTGAGGTAGAACACTGTACCCATGGGAACCAAGAGAAAGGCACATTGAGTTCAAATACAGCTTTTGAGCAAAGCCATTCCTTCAATAAAAATTATACTGAAGATATTTTCCCCATGACACCACCAGAGTTAGAAGAAACCATTAGAGATGAAAAAATAAGAAGACTTAAGCAGGTGCTGAGAGAAAAAGAAGCGGCTCTTGAAGAAATGCGTAAGAAGATGCACCAAAAATAA

Related Sequences

bmy_21217T0 Protein

Length: 736 aa      View alignments
>bmy_21217T0
MYQVVQTIGSDGKNLLQLLPIPNSSGNLIPLVQSTVMSDALKGNTGNPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTAEKVRVTSVGTENFTSSVSKVQSHGVKIDGLTMQTFAVSPSSTQNDSSYILVNTQSLPMTVKSPVLPSGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGTVEASQIPTVIYVSPVNTVKNVVTKNFQNIYPKPVTEIAKPMILNTTQIPMNVAKETQLKGGQHSQAAPVKWIFQENLQPCTPSLVPVKSSNNVASKILKTFVDRKSLGDNTVNMPPLSTISPGGTQSKSMPIKDNALVMFNGKVYLLAKKGTDVLPSQIDQENSVSPDIPPRKDTSQIVSSSPVTEISREVVNIVLAKSKSSQMETKSLSNTQLASMANLSAEKNKKVEKPSLSTPNPHSMNQSINYLKQSKTLFSKPDFPDGFSTGQNSPRKGNIIHSIEKISSSVDATTVTSQQCVFRDQEPKIQNEMASTLEKVTQERNDKNNSQGRSNKASYLNNDAELRKIFGLTKDLRVCLTRIPHHLGSGGGFDSFSCLVKSDTYKETEFIVKEEGRKQGFDKKRKAKTNKKMDHTKKRRTESVYNTTVNGGTNVTSSQLVSSILPTSNVSHHNILRGRNKTREEKRSEVEHCTHGNQEKGTLSSNTAFEQSHSFNKNYTEDIFPMTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK*