Sequence details bmy_21243 (Coding sequence)

Part of scaffold_2901 (Scaffold)

For more information consult the page for scaffold_2901 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

COL6A1 ENSTTRG00000004916 (Bottlenosed dolphin)

Gene Details

collagen, type VI, alpha 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004659, Bottlenosed dolphin)

Protein Percentage 84.05%
cDNA percentage 86.18%
Ka/Ks Ratio 0.30969 (Ka = 0.0674, Ks = 0.2177)

BT.23508 ENSBTAG00000011802 (Cow)

Gene Details

collagen alpha-1(VI) chain precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000015668, Cow)

Protein Percentage 87.79%
cDNA percentage 87.68%
Ka/Ks Ratio 0.16262 (Ka = 0.0742, Ks = 0.4563)

COL6A1  (Minke Whale)

Gene Details

collagen, type VI, alpha 1

External Links

Gene match (Identifier: BACU004347, Minke Whale)

Protein Percentage 90.77%
cDNA percentage 91.71%
Ka/Ks Ratio 0.28685 (Ka = 0.0616, Ks = 0.2148)

Additional orthologs identified in other species via the OPTIC pipeline.

COL6A1 (Human)   Col6a1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 2766 bp    Location:56569..75004   Strand:+
Raw sequence 
>bmy_21243
ATGTGGCCCCCGGCGTGGGGACCCAGGGTCTTAGGGCCCCTCGGGAAGCCCAGCCCGGGGCCCGCAGGCCCCTCCCTCTCGGGGCGAGACGGGACCGGCCGTCTGTCCACCTGTGACGTGGTGGCCGTCCTGCCCTCGGATGGACACAGCAGGGGAGCGGGCCTGGGTCTGGGGAGGGCCGCTCACCTCCGCGGGGCCCGCAGGTACTACCGCTGTGACCGCAACCTGGTGTGGAACGCGGGCGCGCTGCACTACAGCGACGAGGTAGAGATCATCCGCGGGCTCACGCGCATGCCCAGCGGCCGTGACGTGCTCAAGAGCAGCGTGGACGCGGTCAAGTACTTCGGCAAAGGCACCTACACGGACTGTGCCATCAAGAAGGGGCTGGAGGAGCTGCTCGTGGGGGGCTCCCACCTGAAGGAGAACAAGTATCTGATCGTGGTGACTGATGGGCACCCCCTGGAGGGCTACAAGGAGCCCTGCGGGGGCCTGGAAGACGCCGTGAATGAGGCCAAGCACCTGGGCATCAAAGTCTTCTCTGTGGCCATCACGCCCGACCACCTGGAGCCACGTCTGAGCATCATCGCCACGGACCACACGTACCGGCGCAACTTCACCGCGGCCGACTGGGGGCAGAGCCGTGACGCGGAGGAAGTCATCAGCCAGACCATCGACACCATCACAGACATGATTAAAAATAACGTGGAGCAAGTGTGCTGTTCCTTCGAGTGCCAGCCCGCCAGAGGACCTCCCGGGCTGCGGGGCGACCCCGGGTATGAGGGAGAAAGAGGGAAGCCAGGGCTCCCGGGAGAGAAAGGAGACACCGGAGACCCCGGAAGGCCTGGGGACCTCGGACCCGTCGGCTACCAGGGCATGAAGGGAGAAAAAGGGAGCCGAGGGGAGAAGGGCTCCAGGGGACCCAAGGGCTACAAGGGCGAGAAGGGGAAGCGTGGCGTGGACGGCGTGGACGGCATGAAGGGGGAGACGGGGTACCCTGGCCTGTCAGGCTGCAAGGGCTCGCCCGGATTCAATGGCGTCCAAGGACCCTCTGGGCCCAAGGGCGACGCGGGTGCCTTTGGACTGAAAGGAGATAAGGGTGAGCCTGGAGCAGACGGGGAGCCTGGGAGGCCAGGGAACACGGGGCCCACCGGAGACGAGGGTGAGCCYGGAGAGCCTGGTCCCCTGGGAGAGAAGGGAGAAGCCGGCGACGAGGGAAACGCGGGACCAGACGGACCCCCCGGAGAGAAGGGCGGCCCTGGGGAAAGAGGACCACGGGGGACCTCAGGCGCGCGGGGCCCGAGAGGAGACCCGGGCGAAGCTGGACCCCAAGGTGACCAGGGACGAGAAGGCCCCGTTGGCATCCCCGGAGACCCGGGTGAGGCTGGCCCCACTGGACCGAAAGGATACCGCGGTGACGAGGGGCCCCCAGGGACCGAGGGCCCCGGAGGAGCCTCAGGGCCCCCAGGACCCCCCGGAGACCCCGGGCTGATGGGCGAAAGGGGTGAAGACGGCCCCCCCGGAAACGGCACCGAGGGCTTCCCCGGCTTCCCTGGCTATCCGGGCAGCAGGGGTCCTCCCGGGATAAATGGCACCAAAGGCTACCCTGGCCTCAAGGGAGACGAGGGAGAAGCCGGGGACCCCGGAGAGGACAACAATGACATTTCTCCCCGAGGCGCCAAAGGAGCAAAGGGCTACCGAGGCCCCGAAGGCCCCCAGGAATGCGAGATTCTGGACATCATCATGAAAATGTGCTGGGTCCTGGGAGGGGCCCCGAGGCTGAGCCCGCCGCCGCCCACAGAGTGCAAGTGCGGCCCCATCGACATCCTCTTCGTGCTGGACAGCTCCGAGAGCATCGGCCTGCAGAACTTCGAGATCTCCAAGGACTTCATCGTCAAGGTCATCGACCGGCTGAGCAGGGACGAGCTGGTCAAGGTGGTCTCCGTGGGCATCAAGGATGTGTTTGGCTTAGCCGCGGGCTCCGACCAACTCAACGTCATCTCCTGCCAAGGCCTGGCGCCCCAGGGACGGCCAGGCATCTCGCTGGTCAAGGAGAACTACGCCGAGCTGCTGGACGACGGCTTCCTGAAGAACGTCACCGCCCAGATCTGCATAGACAAGAAATGTCCGGATTACACCTGCCCAATCACCTTCTCCTCCCCGACCGACATCACCATCCTGCTGGACGGCTCGGCCAGCGTGGGCAGCCACAACTTCGACACCTCCAAGCGCTTCGCCAAGCGGCTGGCCGAGCGCTTCCTGACAGCGGGCCAGACGGACCCGGGCCAGGAGGTGCGCGTAGCGGTGGTGCAGTACAGCGGCACCGGGCAGCAGCTGCCGGAGCGCGCGGCGCTGCAGTTCCTGCAGAACTACACCATGCTGGCCAGCGCCCTGGACACCATGGACTTCTTCAACGATGCCACCGACGTCACCGACGCCCTGGGCTACGTGACTCGCTTCTACCGCGAGGCCTCGTCCGGCGCCGCCAAGAAGAGGCTGCTGCTCTTCTCGGACGGCAACTCGCAGGGCGCCACGGCGGCCACCATCGAGAAGGCCGTGCAGGAGGCCCAGCGGGCAGGCATCGAGATCTTCATGGTGGTGGTGGGCCCCCAGGTGAACGAGCCCCACGTGCGCGTCCTGGTCACCGGCAAGGCGGCCGAGTACGACGTGGCCTTCGGTGAGCGCCACCTGTTCCGCGTGCCCAGCTACCAGGCGCTGCTGCGTGGTGTCTTCTACCAGACGGTGTCCAGGAAGGTGGCGTTGGGCTAG

Related Sequences

bmy_21243T0 Protein

Length: 922 aa      View alignments
>bmy_21243T0
MWPPAWGPRVLGPLGKPSPGPAGPSLSGRDGTGRLSTCDVVAVLPSDGHSRGAGLGLGRAAHLRGARRYYRCDRNLVWNAGALHYSDEVEIIRGLTRMPSGRDVLKSSVDAVKYFGKGTYTDCAIKKGLEELLVGGSHLKENKYLIVVTDGHPLEGYKEPCGGLEDAVNEAKHLGIKVFSVAITPDHLEPRLSIIATDHTYRRNFTAADWGQSRDAEEVISQTIDTITDMIKNNVEQVCCSFECQPARGPPGLRGDPGYEGERGKPGLPGEKGDTGDPGRPGDLGPVGYQGMKGEKGSRGEKGSRGPKGYKGEKGKRGVDGVDGMKGETGYPGLSGCKGSPGFNGVQGPSGPKGDAGAFGLKGDKGEPGADGEPGRPGNTGPTGDEGEPGEPGPLGEKGEAGDEGNAGPDGPPGEKGGPGERGPRGTSGARGPRGDPGEAGPQGDQGREGPVGIPGDPGEAGPTGPKGYRGDEGPPGTEGPGGASGPPGPPGDPGLMGERGEDGPPGNGTEGFPGFPGYPGSRGPPGINGTKGYPGLKGDEGEAGDPGEDNNDISPRGAKGAKGYRGPEGPQECEILDIIMKMCWVLGGAPRLSPPPPTECKCGPIDILFVLDSSESIGLQNFEISKDFIVKVIDRLSRDELVKVVSVGIKDVFGLAAGSDQLNVISCQGLAPQGRPGISLVKENYAELLDDGFLKNVTAQICIDKKCPDYTCPITFSSPTDITILLDGSASVGSHNFDTSKRFAKRLAERFLTAGQTDPGQEVRVAVVQYSGTGQQLPERAALQFLQNYTMLASALDTMDFFNDATDVTDALGYVTRFYREASSGAAKKRLLLFSDGNSQGATAATIEKAVQEAQRAGIEIFMVVVGPQVNEPHVRVLVTGKAAEYDVAFGERHLFRVPSYQALLRGVFYQTVSRKVALG*