Sequence detailsbmy_21289 (Coding sequence)

Part of scaffold_2855 (SequenceType object (1))

For more information consult the page for scaffold_2855 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SGPP2ENSBTAG00000046649 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000054401, Cow)

Protein Percentage 93.58%
cDNA percentage 90.73%
Ka/Ks Ratio 0.1047 (Ka = 0.0339, Ks = 0.3243)

SGPP2 (Minke Whale)

Gene Details

sphingosine-1-phosphate phosphatase 2

External Links

Gene match (Identifier: BACU006930, Minke Whale)

Protein Percentage 15.65%
cDNA percentage 32.65%
Ka/Ks Ratio 0.15515 (Ka = 1.6457, Ks = 10.6068)

Additional orthologs identified in other species via the OPTIC pipeline.

SGPP2 (Human)   Sgpp2 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 564 bp    Location:192848..189667   Strand:-
Raw sequence 
>bmy_21289
ATGATGGCGGAAGATGTGCTGGGTGGTATCCTGATCACCGCCATCCTCATCGTCCTCACCTACCCCGCCTGGACCCTTATCGATCGCCTGGACTCGGCCAACCCCCTCTTCCCTGTGTGTGTCCTGGTGGTGCCATTCTTCTTGTGTTACAATTACCCCGTGTCCGATTACTACAGCCCGACCAGAGCGGACACCACCACCATTATGGCTGCCGGGGCTGGGGTGACCATAGGATTCTGGATCAACCATTTTTTYCAGCTCGTGTCCAAGCCCACGGACTCTCTCCCTGTTATTCAGAACATCCCGCCCCTCACCAGGGACCTGTTAGTTTTGGGTCTGACCAGATTTACGGTGGGAATTGTGCTGCTCCTCCTGGTTCGTCAACTTGTACAGAATCTCTCGCTGCAAGTGCTGTACTCCTGGTTCAAGGTGGTCACCAGAAACAAGGAGGCCAGGCGGAGACTGGAGATTGAAGTGCCTTACAAGTTTGTCACCTACACGTCAGTTGGCATCTGTGCTACCACCTTTGTGCCAATGCTACACAGGTTTCTGGGATTACTGTGA

Related Sequences

bmy_21289T0 SequenceType object (3)

Length: 188 aa      
>bmy_21289T0
MMAEDVLGGILITAILIVLTYPAWTLIDRLDSANPLFPVCVLVVPFFLCYNYPVSDYYSPTRADTTTIMAAGAGVTIGFWINHFFQLVSKPTDSLPVIQNIPPLTRDLLVLGLTRFTVGIVLLLLVRQLVQNLSLQVLYSWFKVVTRNKEARRRLEIEVPYKFVTYTSVGICATTFVPMLHRFLGLL*