Part of scaffold_2876 (Scaffold)

For more information consult the page for scaffold_2876 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TRIM71 ENSTTRG00000016780 (Bottlenosed dolphin)

Gene Details

tripartite motif containing 71, E3 ubiquitin protein ligase

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015908, Bottlenosed dolphin)

Protein Percentage 69.88%
cDNA percentage 71.75%
Ka/Ks Ratio 0.27154 (Ka = 0.1396, Ks = 0.514)

TRIM71 ENSBTAG00000022744 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000030842, Cow)

Protein Percentage 82.14%
cDNA percentage 80.64%
Ka/Ks Ratio 0.09971 (Ka = 0.1289, Ks = 1.2924)

TRIM71  (Minke Whale)

Gene Details

tripartite motif containing 71, E3 ubiquitin protein ligase

External Links

Gene match (Identifier: BACU014647, Minke Whale)

Protein Percentage 95.35%
cDNA percentage 95.51%
Ka/Ks Ratio 0.28013 (Ka = 0.0345, Ks = 0.1233)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2271 bp    Location:157245..169802   Strand:+
>bmy_21331
ATGCCTCCTGGGTTCCGTCTCCCACGGCTGCTGGAAAACGTACAGCACGGGACAAAAATCGGCACTAAAGTTACAAACCCGATCACGTTTCCCTCCTGTAAAATAGGGTCCAGAAAACTTGCCGTATCACAACCATTTCTTCAAAAGTTCCCGGAGAAGCAACCTAACCCCTGCTGGATCACACACCCCCTACGTGGAGCAGCCTGTTTGGCTGACAGTCATTTGGGCAATCATTTCCTCGTGGACGCGCACTACGCCGAGACTTTGCACGCAGGGCCCCAGGGAGGCACAGAGCATCGAATAAAGCGGCGCTCTCAGCACCGGCTGCCTCCCAGGGTCAGCCCCTTGGAACAACTTGGCAGGAAGAAGAAAGACAAGAAGCTGGCTGACTTTACCATTAGCCTTTGGCCTCTGTTCCAGAAGCTTAAGTCCGCACCTTGCTTGAGTGCCTTGGGTGCGCTCGTGTCCTTGATGGGGGGACGGTGGCAGCCAACTGCTGTTTTTATTCATATGACTGTGCTGCACCTGTACTGTGACACGTGCTCAGTGCCCATCTGCCGAGAGTGTACTGTGGGCCGGCACGGCGGCCACAGCTTCGTCTACCTCCAGGAGGCGCTGCAGGACTCACGGGCGCTCACCATCCAACTGCTGGCTGATGCCCAGCAGGGCCGCCAGGCCATCCAGCTGAGCATCGAGCAGGCCCAGACGGTGGCAGAGCAGGTGGAGATGAAGGCAAAAGTGGTACAGTCGGAGGTCAAAGCCGTGACTGCGAGACACAAGAAGGCCCTGGAGGAGCGGGAGTGTGAGCTGCTGTGGAAGGTAGAGAAAATCCGCCAGGTGAAAGCCAAGTCCCTGTACCTGCAGGTGGAGAAGCTGCGGCAAAACCTCAACAAGCTGGAGAGCACCATCAGCGCCGTGCAGCAGGTCCTGGAGGAGGGGCGGGCGCTGGACATCCTGCTGGCCCGAGACCGCATGCTGGCGCAGGTGCAGGAGCTCAAGACCGTGCGCAGCCTCCTGCAGCCCCAGGAGGACGACCGGGTCATGTTCACACCCCCTGACCAGGCCCTCTACCTCGCCATCAAGTCCTTCGGCTTTGTCAGCAGCGGGGCCTTCGCGCCGCTCACCAAGGCCACGGGCGACGGCCTCAAGCGGGCCCTCCAGGGCAAGGTGGCCTCCTTCACTGTCATCGGCTACGACCACGACGGGGAGCCCCGCCTCTCAGGAGGCGACCTCATGTCGGCTGTGGTCCTGGGCCCTGACGGCAACCTGTTTGGTGCGGAGGTGAGCGACCAGCAGAACGGGACATACGTGGTGAGCTACCGGCCGCAGCTGGAGGGCGAGCACCTGGTGTCGGTCACCCTGTGCAACCAGCACATCGAGAACAGCCCCTTCAAGGTGGTGGTCAAGTCCGGCCGCAGCTACGTGGGCATCGGGCTCCCGGGCCTGAGCTTCGGCAGTGAGGGCGACAGCGATGGCAAGCTGTGCCGGCCCTGGGGCGTGAGCGTGGACAAGGAGGGCTACATCGTGGTCGCCGACCGCAGCAACAATCGCATCCAGGTGTTCAAGCCCTGCGGCGCCTTCCACCACAAGTTCGGCACTCTGGGCTCCCGGCCCGGGCAGTTCGACCGGCCCGCCGGCGTAGCCTGTGACACCTCCCGCAGGATCGTGGTGGCCGACAAGGACAATCATCGCATCCAGATCTTCACCTTTGAGGGCCAGTTCCTCCTCAAGTTCGGTGAGAAGGGCACCAAAAACGGGCAATTTAACTACCCTTGGGATGTGGCGGTGAATTCCGAGGGCAAGATCCTGGTCTCCGACACGCGGAACCACCGGATCCAGCTGTTCGGGCCCGATGGGGTCTTCCTGAATAAGTATGGCTTCGAGGGGGCTCTCTGGAAGCACTTTGACTCCCCGAGGGGGGTGGCTTTCAACCACGAGGGCCACTTGGTGGTCACCGACTTCAACAACCACCGGCTCCTGGTCATTCACCCAGACTGCCAGTCGGCCCGCTTCCTGGGCTCAGAGGGCACCGCCAATGGGCAATTCCTGCGCCCACAGGGTGTGGCCGTGGACCAGGAGGGGCGCATCATCGTGGCCGATTCCAGGAACCACCGGGTGCAGATGTTCGAGTCCAACGGCAGCTTCCTGTGCAAGTTTGGCGCCCAGGGCAGTGGCTTTGGGCAGATGGACCGGCCCTCCGGCATCGCTGTCACGCCGGATGGGATGATTGTCGTGGTGGACTTTGGCAACAATCGAATCCTCATCTTCTAA

Related Sequences

bmy_21331T0 Protein

Length: 757 aa      View alignments
>bmy_21331T0
MPPGFRLPRLLENVQHGTKIGTKVTNPITFPSCKIGSRKLAVSQPFLQKFPEKQPNPCWITHPLRGAACLADSHLGNHFLVDAHYAETLHAGPQGGTEHRIKRRSQHRLPPRVSPLEQLGRKKKDKKLADFTISLWPLFQKLKSAPCLSALGALVSLMGGRWQPTAVFIHMTVLHLYCDTCSVPICRECTVGRHGGHSFVYLQEALQDSRALTIQLLADAQQGRQAIQLSIEQAQTVAEQVEMKAKVVQSEVKAVTARHKKALEERECELLWKVEKIRQVKAKSLYLQVEKLRQNLNKLESTISAVQQVLEEGRALDILLARDRMLAQVQELKTVRSLLQPQEDDRVMFTPPDQALYLAIKSFGFVSSGAFAPLTKATGDGLKRALQGKVASFTVIGYDHDGEPRLSGGDLMSAVVLGPDGNLFGAEVSDQQNGTYVVSYRPQLEGEHLVSVTLCNQHIENSPFKVVVKSGRSYVGIGLPGLSFGSEGDSDGKLCRPWGVSVDKEGYIVVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQFDRPAGVACDTSRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLFGPDGVFLNKYGFEGALWKHFDSPRGVAFNHEGHLVVTDFNNHRLLVIHPDCQSARFLGSEGTANGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESNGSFLCKFGAQGSGFGQMDRPSGIAVTPDGMIVVVDFGNNRILIF*