Sequence detailsbmy_21331 (Coding sequence)

Part of scaffold_2876 (SequenceType object (1))

For more information consult the page for scaffold_2876 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TRIM71ENSTTRG00000016780 (Bottlenosed dolphin)

Gene Details

tripartite motif containing 71, E3 ubiquitin protein ligase

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000015908, Bottlenosed dolphin)

Protein Percentage 69.88%
cDNA percentage 71.75%
Ka/Ks Ratio 0.27154 (Ka = 0.1396, Ks = 0.514)

TRIM71ENSBTAG00000022744 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000030842, Cow)

Protein Percentage 82.14%
cDNA percentage 80.64%
Ka/Ks Ratio 0.09971 (Ka = 0.1289, Ks = 1.2924)

TRIM71 (Minke Whale)

Gene Details

tripartite motif containing 71, E3 ubiquitin protein ligase

External Links

Gene match (Identifier: BACU014647, Minke Whale)

Protein Percentage 95.35%
cDNA percentage 95.51%
Ka/Ks Ratio 0.28013 (Ka = 0.0345, Ks = 0.1233)

Additional orthologs identified in other species via the OPTIC pipeline.

TRIM71 (Human)   Trim71 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2271 bp    Location:157245..169802   Strand:+
Raw sequence 
>bmy_21331
ATGCCTCCTGGGTTCCGTCTCCCACGGCTGCTGGAAAACGTACAGCACGGGACAAAAATCGGCACTAAAGTTACAAACCCGATCACGTTTCCCTCCTGTAAAATAGGGTCCAGAAAACTTGCCGTATCACAACCATTTCTTCAAAAGTTCCCGGAGAAGCAACCTAACCCCTGCTGGATCACACACCCCCTACGTGGAGCAGCCTGTTTGGCTGACAGTCATTTGGGCAATCATTTCCTCGTGGACGCGCACTACGCCGAGACTTTGCACGCAGGGCCCCAGGGAGGCACAGAGCATCGAATAAAGCGGCGCTCTCAGCACCGGCTGCCTCCCAGGGTCAGCCCCTTGGAACAACTTGGCAGGAAGAAGAAAGACAAGAAGCTGGCTGACTTTACCATTAGCCTTTGGCCTCTGTTCCAGAAGCTTAAGTCCGCACCTTGCTTGAGTGCCTTGGGTGCGCTCGTGTCCTTGATGGGGGGACGGTGGCAGCCAACTGCTGTTTTTATTCATATGACTGTGCTGCACCTGTACTGTGACACGTGCTCAGTGCCCATCTGCCGAGAGTGTACTGTGGGCCGGCACGGCGGCCACAGCTTCGTCTACCTCCAGGAGGCGCTGCAGGACTCACGGGCGCTCACCATCCAACTGCTGGCTGATGCCCAGCAGGGCCGCCAGGCCATCCAGCTGAGCATCGAGCAGGCCCAGACGGTGGCAGAGCAGGTGGAGATGAAGGCAAAAGTGGTACAGTCGGAGGTCAAAGCCGTGACTGCGAGACACAAGAAGGCCCTGGAGGAGCGGGAGTGTGAGCTGCTGTGGAAGGTAGAGAAAATCCGCCAGGTGAAAGCCAAGTCCCTGTACCTGCAGGTGGAGAAGCTGCGGCAAAACCTCAACAAGCTGGAGAGCACCATCAGCGCCGTGCAGCAGGTCCTGGAGGAGGGGCGGGCGCTGGACATCCTGCTGGCCCGAGACCGCATGCTGGCGCAGGTGCAGGAGCTCAAGACCGTGCGCAGCCTCCTGCAGCCCCAGGAGGACGACCGGGTCATGTTCACACCCCCTGACCAGGCCCTCTACCTCGCCATCAAGTCCTTCGGCTTTGTCAGCAGCGGGGCCTTCGCGCCGCTCACCAAGGCCACGGGCGACGGCCTCAAGCGGGCCCTCCAGGGCAAGGTGGCCTCCTTCACTGTCATCGGCTACGACCACGACGGGGAGCCCCGCCTCTCAGGAGGCGACCTCATGTCGGCTGTGGTCCTGGGCCCTGACGGCAACCTGTTTGGTGCGGAGGTGAGCGACCAGCAGAACGGGACATACGTGGTGAGCTACCGGCCGCAGCTGGAGGGCGAGCACCTGGTGTCGGTCACCCTGTGCAACCAGCACATCGAGAACAGCCCCTTCAAGGTGGTGGTCAAGTCCGGCCGCAGCTACGTGGGCATCGGGCTCCCGGGCCTGAGCTTCGGCAGTGAGGGCGACAGCGATGGCAAGCTGTGCCGGCCCTGGGGCGTGAGCGTGGACAAGGAGGGCTACATCGTGGTCGCCGACCGCAGCAACAATCGCATCCAGGTGTTCAAGCCCTGCGGCGCCTTCCACCACAAGTTCGGCACTCTGGGCTCCCGGCCCGGGCAGTTCGACCGGCCCGCCGGCGTAGCCTGTGACACCTCCCGCAGGATCGTGGTGGCCGACAAGGACAATCATCGCATCCAGATCTTCACCTTTGAGGGCCAGTTCCTCCTCAAGTTCGGTGAGAAGGGCACCAAAAACGGGCAATTTAACTACCCTTGGGATGTGGCGGTGAATTCCGAGGGCAAGATCCTGGTCTCCGACACGCGGAACCACCGGATCCAGCTGTTCGGGCCCGATGGGGTCTTCCTGAATAAGTATGGCTTCGAGGGGGCTCTCTGGAAGCACTTTGACTCCCCGAGGGGGGTGGCTTTCAACCACGAGGGCCACTTGGTGGTCACCGACTTCAACAACCACCGGCTCCTGGTCATTCACCCAGACTGCCAGTCGGCCCGCTTCCTGGGCTCAGAGGGCACCGCCAATGGGCAATTCCTGCGCCCACAGGGTGTGGCCGTGGACCAGGAGGGGCGCATCATCGTGGCCGATTCCAGGAACCACCGGGTGCAGATGTTCGAGTCCAACGGCAGCTTCCTGTGCAAGTTTGGCGCCCAGGGCAGTGGCTTTGGGCAGATGGACCGGCCCTCCGGCATCGCTGTCACGCCGGATGGGATGATTGTCGTGGTGGACTTTGGCAACAATCGAATCCTCATCTTCTAA

Related Sequences

bmy_21331T0 SequenceType object (3)

Length: 757 aa      View alignments
>bmy_21331T0
MPPGFRLPRLLENVQHGTKIGTKVTNPITFPSCKIGSRKLAVSQPFLQKFPEKQPNPCWITHPLRGAACLADSHLGNHFLVDAHYAETLHAGPQGGTEHRIKRRSQHRLPPRVSPLEQLGRKKKDKKLADFTISLWPLFQKLKSAPCLSALGALVSLMGGRWQPTAVFIHMTVLHLYCDTCSVPICRECTVGRHGGHSFVYLQEALQDSRALTIQLLADAQQGRQAIQLSIEQAQTVAEQVEMKAKVVQSEVKAVTARHKKALEERECELLWKVEKIRQVKAKSLYLQVEKLRQNLNKLESTISAVQQVLEEGRALDILLARDRMLAQVQELKTVRSLLQPQEDDRVMFTPPDQALYLAIKSFGFVSSGAFAPLTKATGDGLKRALQGKVASFTVIGYDHDGEPRLSGGDLMSAVVLGPDGNLFGAEVSDQQNGTYVVSYRPQLEGEHLVSVTLCNQHIENSPFKVVVKSGRSYVGIGLPGLSFGSEGDSDGKLCRPWGVSVDKEGYIVVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQFDRPAGVACDTSRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLFGPDGVFLNKYGFEGALWKHFDSPRGVAFNHEGHLVVTDFNNHRLLVIHPDCQSARFLGSEGTANGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESNGSFLCKFGAQGSGFGQMDRPSGIAVTPDGMIVVVDFGNNRILIF*