Part of scaffold_2953 (Scaffold)

For more information consult the page for scaffold_2953 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TAF1C ENSTTRG00000002062 (Bottlenosed dolphin)

Gene Details

TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001938, Bottlenosed dolphin)

Protein Percentage 87.61%
cDNA percentage 89.57%
Ka/Ks Ratio 0.34993 (Ka = 0.0435, Ks = 0.1243)

BT.66017 ENSBTAG00000018772 (Cow)

Gene Details

TATA box-binding protein-associated factor RNA polymerase I subunit C

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000051454, Cow)

Protein Percentage 84.14%
cDNA percentage 87.35%
Ka/Ks Ratio 0.23154 (Ka = 0.0865, Ks = 0.3737)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2448 bp    Location:69230..77714   Strand:+
>bmy_21381
ATGGACTTCCCCAGCTCCCTCCCGCCCTCGTTGTTTACGACTGGCCCCCTTGGTCTGAGCGATGTCCCTGACGTGTCCTTCATGTGCAGCTGGAGAGACGCGCTGACCCTGCCGGAGTCCCTGCCCCAAGGTCCTGAGGGCCCTCGGCACCTCCAGGCACCTAGGACACCTGGTTCCATTTCCGGGCCCTTCCGCAGCCTCACTCTTCCCTCAGATCCCTGGGACCCCGGCGTGACTGCCCAGGATCTGCTTTTCCGGGGAGGTTACCAGTTCCGTAGACAGCCCCAAGCCGTGCTGGACGTTACTGAGCAGCTCAGCCGGTTCTTGTGGGACCATGGGGACATAGCCTTTGCACCCCTGGGGAAGCTGATGCTGGAGAATTTCAAACTGGAGGGAGCACGGGGCCGCTCTAAGAAGAAGACAGTGGTCAGCGTGAAGAGGCTACTCCAGGACCTCGGTGGACACCAGCCCTGGGGGCAAGTGGCTAGTGAGACAGGACAGGATGGCTGTCCCTGGGCTTACCTCAGCCACCGCCAGCGCCGGTTCTCCATCCTTGGGGGCCCGATCCTCAGCACGTCGGTGGCGAGCCTCCTGGGGGAGCTGCTGCATGAGGAGCTGGCCCTGCGGTGGGAGCAGCTGCTCCTGGACGACGCCTTCACTGGGGGTGCGCTGGCCTGGGTGCCCAGCAGGACGCCCAGGGCTGGGCAGCTGGTCTACCCTGCAGGAGGCGCCCTGGACAGGCTGTCGAGATGCCCAGACTTCCAGAAGGTCAGCCTGATCCCAGGCAGTGAGCCCCGGGTTCTCGGAGGCCCTGGCCATATCCAGCTCCGGGGACCTGTCCGGCAGGTGGTGACCCGCACCGTGCAGGGAGAAGCTCTGCTGGCTGTCCGCTCTGACTACCACTGTGCCTTGTGGAAGGTCAGTAAGCAGGGGCAGCCGGCCCCTCTCCAGGTGTTGCAGGTCGAGAAGGGGGCCACAGGGATCAGCCTCAGGCTGCGGCAAATCTACAAGGACCCCGAGACCCTTGTGTTCCGGGACCCCTCTCCCTGGCGTTGGGCAGACTTCACCGCCCACCCGCGAGTGCTGACTGTGGGTGATCGCACCGGAGTGAAGATGGTGGACACTCAGGGCCCGCCGGGCTGTGGTCTGCTGCTTTTTCGTGGAGGGGCAGAAGCATCGTGCCAGAAAGGGGAGCGGGTCCTGCTCACCCAGTACCTGGGGGAGTGCGGCCCCGAGTGTCTGCACCCCACGCTGCACCTCATCTGCACCCAGTTCTCGCTGTACCTGGTGGATGAGCGCCTTCCCTTGGTGCCCCTGCTGAAGTGGAACCACGGCCTCCCCTCCGCGCCCCTGCTGGCCCGGCTGCTGCCCCCGCCCCGCACAGGCCTCCCACGGCCGCTGCTCCTGGCGGGCCAGGGTGGGGAGCTGCAGCTGCTGCACATCGCAGGAGAGGGGGCCTCCACGCCCCGGCTGGCAGGGCCGCCCCAGTCTCTCCCTTCCAGGAGCGACTCCCTCTCTGCCTTCCCCCTGCTGGAGCCCAAGAGTCAGTGGCGGCTGCAGGAACGTCTGAAAGCACCAGCCATAGGTCTGGCCACCGCCATCCCACCCTCCGCTTCCACACCGGTGCTGTCGCTCTTCCAACTTTCGGCGGCTGGAGACGTCTTCCACCAGCACCTCCACCTCCAGGGAGAGGCCGGTCCTGACTCTCCTGCCCCCACGGCTTCCTGGACCCCCCAGGCCACTGCCTCCTGCAGCCGGTGGCTGAAGGCCCTGCTGGAGGTGCCCCCGGCTCCCCCCGTGTGGGCTGCACCCACCTTCTCCCACCGCCGCCTGCTGGGCTGCTTTGAGCCTCAGAAGGCAGAGGGCAAAGCGCCAGAGGGTCTTCGCATGGCCATGGCCAAAGGGCGTCTCCTGCAGCCGAGGGACCTGGGCTTGCTCCCCACGGAAGAGCGGGCCCCYGCCCCCGAGCCAGGCCCCGAGGATGAGCTCAGCGAGCGTTTGGAGGCAGCCTGGGAGGGTCAGGCGGCGGCCTGGTGGGAGAGGCGGCGGGGCAGCGGCTCGGGGCCCGGCAAACAGCCCAAGCGGCACAAGCGCCGGACTCAACTGTCCAGCACCTTCTCCTCACTCAGCGGCCGCTTAGACCTCTCAGACGCCGCCAGCCCCCCTCCCAGCCCAGAGCGGACACTCCCCGAAGCCAGGCCTCAGCCCCCAGTGACCCCGCCCTCCCAGGAGTCCACCCAGGAGCTGTGGGCCCGGGGCGTCCCCTCGGAGCGGCAGCAGACCCTCCGGGACTACATGGCTGAGCTGCCGCTCCGAGGGGACGCCCCGGGGGCTGCCTCTGTGCCTTCCTCCCAGACCTCCAGCGTCCGGGCCACCCCCTCCCGGCAGCGGGCAGCCGTCCGCTCCGGCTCTCAGCCACACTGGAAGAAGCCCCGCATGGGCTTCTGA

Related Sequences

bmy_21381T0 Protein

Length: 816 aa      View alignments
>bmy_21381T0
MDFPSSLPPSLFTTGPLGLSDVPDVSFMCSWRDALTLPESLPQGPEGPRHLQAPRTPGSISGPFRSLTLPSDPWDPGVTAQDLLFRGGYQFRRQPQAVLDVTEQLSRFLWDHGDIAFAPLGKLMLENFKLEGARGRSKKKTVVSVKRLLQDLGGHQPWGQVASETGQDGCPWAYLSHRQRRFSILGGPILSTSVASLLGELLHEELALRWEQLLLDDAFTGGALAWVPSRTPRAGQLVYPAGGALDRLSRCPDFQKVSLIPGSEPRVLGGPGHIQLRGPVRQVVTRTVQGEALLAVRSDYHCALWKVSKQGQPAPLQVLQVEKGATGISLRLRQIYKDPETLVFRDPSPWRWADFTAHPRVLTVGDRTGVKMVDTQGPPGCGLLLFRGGAEASCQKGERVLLTQYLGECGPECLHPTLHLICTQFSLYLVDERLPLVPLLKWNHGLPSAPLLARLLPPPRTGLPRPLLLAGQGGELQLLHIAGEGASTPRLAGPPQSLPSRSDSLSAFPLLEPKSQWRLQERLKAPAIGLATAIPPSASTPVLSLFQLSAAGDVFHQHLHLQGEAGPDSPAPTASWTPQATASCSRWLKALLEVPPAPPVWAAPTFSHRRLLGCFEPQKAEGKAPEGLRMAMAKGRLLQPRDLGLLPTEERAPAPEPGPEDELSERLEAAWEGQAAAWWERRRGSGSGPGKQPKRHKRRTQLSSTFSSLSGRLDLSDAASPPPSPERTLPEARPQPPVTPPSQESTQELWARGVPSERQQTLRDYMAELPLRGDAPGAASVPSSQTSSVRATPSRQRAAVRSGSQPHWKKPRMGF*