Sequence details bmy_21386 (Coding sequence)

Part of scaffold_2952 (Scaffold)

For more information consult the page for scaffold_2952 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

VSTM1 ENSTTRG00000006561 (Bottlenosed dolphin)

Gene Details

V-set and transmembrane domain containing 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000006206, Bottlenosed dolphin)

Protein Percentage 56.88%
cDNA percentage 66.25%
Ka/Ks Ratio 0.77735 (Ka = 0.4371, Ks = 0.5622)

VSTM1 ENSBTAG00000002596 (Cow)

Gene Details

V-set and transmembrane domain-containing protein 1 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000055799, Cow)

Protein Percentage 37.5%
cDNA percentage 50.21%
Ka/Ks Ratio 0.78939 (Ka = 0.8184, Ks = 1.0367)

VSTM1  (Minke Whale)

Gene Details

V-set and transmembrane domain containing 1

External Links

Gene match (Identifier: BACU019195, Minke Whale)

Protein Percentage 57.5%
cDNA percentage 67.29%
Ka/Ks Ratio 0.92148 (Ka = 0.4357, Ks = 0.4728)

Additional orthologs identified in other species via the OPTIC pipeline.

VSTM1 (Human)  

Genome Location

Sequence Coding sequence

Length: 480 bp    Location:20466..30089   Strand:+
Raw sequence 
>bmy_21386
ATGAAGAGTCAAACTAACTCCAAATTCTTTCCAGAGAAATTTTCCAAATCCCTCCTCCATGCCTTGCCCAGCTCAGAGGTTGAACACAGCAGCAAYGTGACCCTCAAGTGCCAGTCTGACGTCCCGAATGTGACATTTGTGCTGGGGAAGTTGCAGGGCTCTGGGTACAAGCGAGAATGCAACTCAACAGGACAGGATACTAAATTCCTCCTCACTGACCTGAAGCCTAAAGATGTTGGACAGTACTTTTGTACCTACAAGACAGTGACTGTAGAGAAATGGGAACTCAGTACACCAAAGTCATCGTTGTCGCCACCTTCACCTGCGTCTCTGTCTTTCTCCTCTTCGTTGCCATCTTCTTCATCTACAGATGCATTCAGCACAATTCATCACATGAAGAATCCGCCAAGAGAACCAGCCATTCCAAATTTCCCAAGCAGGGAGCTACAGGTGTATCCAAACTGGAAAGAATATCTGAAT

Related Sequences

bmy_21386T0 Protein

Length: 160 aa      View alignments
>bmy_21386T0
MKSQTNSKFFPEKFSKSLLHALPSSEVEHSSNVTLKCQSDVPNVTFVLGKLQGSGYKRECNSTGQDTKFLLTDLKPKDVGQYFCTYKTVTVEKWELSTPKSSLSPPSPASLSFSSSLPSSSSTDAFSTIHHMKNPPREPAIPNFPSRELQVYPNWKEYLN