Part of scaffold_2969 (Scaffold)

For more information consult the page for scaffold_2969 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PKP1 ENSTTRG00000015380 (Bottlenosed dolphin)

Gene Details

plakophilin 1 (ectodermal dysplasia/skin fragility syndrome)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000014575, Bottlenosed dolphin)

Protein Percentage 84.57%
cDNA percentage 90.36%
Ka/Ks Ratio 0.18602 (Ka = 0.0637, Ks = 0.3427)

PKP1 ENSBTAG00000046350 (Cow)

Gene Details

Plakophilin-1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000055583, Cow)

Protein Percentage 70.38%
cDNA percentage 78.84%
Ka/Ks Ratio 0.12039 (Ka = 0.1808, Ks = 1.502)

PKP1  (Minke Whale)

Gene Details

plakophilin 1 (ectodermal dysplasia/skin fragility syndrome)

External Links

Gene match (Identifier: BACU001691, Minke Whale)

Protein Percentage 89.11%
cDNA percentage 93.32%
Ka/Ks Ratio 0.18178 (Ka = 0.0533, Ks = 0.2932)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1425 bp    Location:70995..56046   Strand:-
>bmy_21406
ATGGAGAGCTGGGGCCAGCAGTACCCTCGCAGCAGCAATCCCCCGCCCGGCGCCGGCAGCGACATCTGCTTCATGCAGAAGATCAAGGCCAGCCGCAGCGAGCCCAACCTCTACTGCGACCCCCGCGGCACCCTGCGCAAGAGCACGCTGGGCAGCAAGGGCTACAAGACTGCCCAGAACCGCTACAGCATCTACAGCACCTGCAGCGGCCAGAAGGGGGTCAAGAAGTACCCGGTGCGCCAGGCCTCCTGTATCTCCAAGCAGGACCCCGTGTACGTCCAGCCCATCTCCTGCACCAAGGACCAGTCCTTTAGCCACTCAAGGGCCAGCTCCAAGATCTGCAGCGAGGACATTGAGTGCAGCGGGCTGACCATCCCCAAGGCCGTGCAGTACCTGAGCTCCCAGGACGAGAAGTGCCAGACCATCGGGGCCTATTACATCCAGCGCACCTGCTTCCAGGATGAGTCTGCCAAGCAGCAGGTGTACCAGCTGGGCGGCATCTGCAAGCTGGTGAGCCTCCTCCGCAGCCCCAACCAGAACGTGCAGCAGGCCGTGGCCGGGGCCCTGCGCAACCTGGTGTTCCGAAGCACCACGAACAAGCTGGAGACCCAGAGGCAGAGCGGCGTCCGCGAGGCTGTCAGCCTCCTGAGGAGGACCAGCTGCACGGATATCCAGAAGCAGCTGACCGGGCTGCTCTGGAACCTGTCCTCCACCGACGAGCTGAAGGAGGAGCTCATTTCGGACGCCCTGCCCGTCCTGGCTGACCGGGTCATCATCCCGTTCTCCGGCTGGTGCGATGGCAACAGCAGGCTGCCCCAGGAAGCCGTGGACGCTGAGGTCTTCTTCAACGCCTCCGGCTGCCTGAGGAACCTGAGCTCCGTGGACATGGGGCGCCAGACCATGCGCAACTACACAGGTCTCATTGACTCCCTCATGGCCTATATCCAGAACTGCGTGGCGGCCAGCTGCTGTGACGACAAGTCTGTGGAGAACTGCATGTGCATCCTGCACAACCTCTCCTACCACCTGGACACCGAGGTGCCCACCCCCTACCGCCAGCTGGAGTACAACGCCCGCAATGCCTACACCGAGAAGTCCTCCACCGGCTGCTTCAGCAACAAGAACGACAGGATGATGATGCGTGGGTTCGGCCCCTCTCGACTCGCTTCTTGTCCCCAGAACAACAACTACGACTGCCCCCTTCCTGAGGAAGAGCCCAACCCCAAGGGCAGCAGCTGGCTGTACCACTCGAGCGCCATTCGCACCTACCTGAACCTCATGGGCAAGAGCAAGAAGGACGCCACCCTGGAGGCCTGCGCCGGCGCCCTGCAGAACCTGACCGCCAGCAAGGGGCTGGTGAGCGCCCCCCGCCCCGCACCTCTCTCTCCACCCGCAGTCCGGGCTCAGCTCTCCGCGTCCCCATGA

Related Sequences

bmy_21406T0 Protein

Length: 475 aa      View alignments
>bmy_21406T0
MESWGQQYPRSSNPPPGAGSDICFMQKIKASRSEPNLYCDPRGTLRKSTLGSKGYKTAQNRYSIYSTCSGQKGVKKYPVRQASCISKQDPVYVQPISCTKDQSFSHSRASSKICSEDIECSGLTIPKAVQYLSSQDEKCQTIGAYYIQRTCFQDESAKQQVYQLGGICKLVSLLRSPNQNVQQAVAGALRNLVFRSTTNKLETQRQSGVREAVSLLRRTSCTDIQKQLTGLLWNLSSTDELKEELISDALPVLADRVIIPFSGWCDGNSRLPQEAVDAEVFFNASGCLRNLSSVDMGRQTMRNYTGLIDSLMAYIQNCVAASCCDDKSVENCMCILHNLSYHLDTEVPTPYRQLEYNARNAYTEKSSTGCFSNKNDRMMMRGFGPSRLASCPQNNNYDCPLPEEEPNPKGSSWLYHSSAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLVSAPRPAPLSPPAVRAQLSASP*