Part of scaffold_2951 (Scaffold)

For more information consult the page for scaffold_2951 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TRIM28 ENSTTRG00000001999 (Bottlenosed dolphin)

Gene Details

tripartite motif containing 28

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001873, Bottlenosed dolphin)

Protein Percentage 99.86%
cDNA percentage 98.76%
Ka/Ks Ratio 0.01098 (Ka = 0.0006, Ks = 0.0565)

TRIM28 ENSBTAG00000006422 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000008424, Cow)

Protein Percentage 97.57%
cDNA percentage 93.58%
Ka/Ks Ratio 0.03295 (Ka = 0.0106, Ks = 0.3221)

TRIM28  (Minke Whale)

Gene Details

tripartite motif containing 28

External Links

Gene match (Identifier: BACU005932, Minke Whale)

Protein Percentage 99.29%
cDNA percentage 98.29%
Ka/Ks Ratio 0.04428 (Ka = 0.0031, Ks = 0.0703)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2277 bp    Location:52446..47019   Strand:-
>bmy_21431
ATGCGCGACAGTGGCAGCAAGGCTGCCACCGATTCCCAGGATGCGAATCAGCAGTGCTGCACTAGCTGTGAGGATAATGCCCCAGCCACCAGTTACTGTGTGGAGTGCTCTGAGCCGCTGTGTGAGACGTGTGTGGAGGCGCACCAGCGGGTGAAGTACACCAAGGACCACACTGTGCGTTCCACTGGACCAGCCAAGTCGAGGGACGGTGAGCGCACGGTGTATTGCAACGTGCACAAGCACGAGCCCCTTGTGCTGTTTTGCGAGAGTTGCGACACCCTCACCTGCCGGGACTGCCAGCTCAACGCCCACAAGGACCACCAGTACCAGTTCCTGGAGGATGCTGTGAGGAACCAGCGCAAGCTCCTGGCCTCACTGGTGAAGCGCCTCGGGGACAAGCATGCGACATTGCAGAAGAACACCAAGGAGGTTCGCAGCTCGATCCGCCAAGTGTCTGACGTACAGAAGCGCGTGCAGGTGGACGTTAAGATGGCCATCCTGCAGATCATGAAGGAACTGAACAAGCGGGGCCGTGTGCTGGTTAACGACGCCCAGAAGGTGACTGAGGGGCAGCAGGAGCGCCTGGAGCGCCAGCACTGGACCATGACCAAGATCCAGAAGCACCAGGAACACATCCTGCGCTTCGCCTCGTGGGCTCTGGAAAGTGACAACAACACTGCGCTGCTGCTCTCCAAGAAGCTGATCTACTTCCAGCTGCACCGGGCCCTCAAGATGATCGTGGACCCCGTGGAGCCACACGGCGAGATGAAGTTCCAGTGGGACCTCAATGCCTGGACCAAGAGCGCAGAGGCCTTTGGCAAGATCGTGGCAGAACGTCCTGGCACCAACTCCACAGGCCCTGCACCCATGGCCCCTCCTCGGGCTCCAGGGCCTTTGAGCAAGCAGGGCTCTGGCAGCAGCCAGGTGAGCCAGGGAGGGGACCATAGCGGGAGGAAAGAGGCACGGGGTCCTGTGGGATGCCTGTCCACTGAGGTCCACTTGCTCTGCCCACAGCCCATGGAGGTGCAGGAAGGCTACGGCTTCGGGTCAGCAGATGACCCTTACTCGAGTGCAGAGCCCCACGTGTCAGGGGTGAAGCGGTCCCGCTCAAGTGATGGCGAGGTGAGTGGCCTCATGCGTAAGGTGCCGCGGGTGAGCCTCGAACGCCTGGACTTGGATCTCACGGCTGACAGCCAGCCACCAGTCTTCAAGGTCTTCCCAGGCAGCACCACTGAGGATTACAACCTCATCGTCATTGAGCGAGGTGCTGCAGCTGTTGCTGCTGGACAGCCTGGGACTGCGCCCCCCGGGGCCCCGGGCGCCCCGCCCCTGCCTGGCATGGCCATCGTCAAGGAGGAAGAAACAGAGGCTGCCATTGGCGCCCCGCCTGCTGCCACTGAGGGCCCCGAGACCAAACCTGTGTTGATGGCCCTGGCGGAGGGCCCCGGCGCCGAGGGCCCCCGCCTGGCTTCACCCAGTGGCAGCACCAGCTCAGGCCTGGAGGTGGTGGCTCCAGAGGGCACCTCAGCCCCAGCTGGTGGCCCAGGTGCCCTGGATGACAGTGCCACCATCTGCCGTGTCTGCCAGAAGCCAGGTGACCTGGTCATGTGCAACCAGTGCGAATTCTGCTTCCACCTGGACTGCCACCTGCCTGCCCTGCAGGATGTGCCAGGGTGCGAGGCTGTGCGGGGTCTGCAGGGCGGAGGGCTGGGCCAGGTCCCRTGCAGCCCCTCACGGTCTGTTCCCTCCAGGGAGGAGTGGAGCTGCTCTCTCTGCCACGTGCTACCCGACCTGAAGGAGGAGGATGGCAGCCTAAATCTGGATGGGGGTGACAGCACTGGTGTGGTGGCCAAGCTCTCGCCAGCCAACCAGCAGAAGTGTGAGCGCGTCCTGCTGGCCCTCTTCTGCCATGAGCCCTGCCGGCCCCTGCACCAGCTGGCTACTGACTCCACCTTCTCCCTGGATCAGCCCGGCGGCACCCTGGACTTGACGCTGATTCGAGCCCGTCTCCAGGAGAAGTTGTCACCCCCCTACAGCTCCCCCCAGGAGTTTGCCCAGGATGTGGGCCGCATGTTCAAGCAGTTCAACAAGCTGACAGAGGACAAGGCCGACGTGCAGTCCATCATTGGCCTGCAGCGCTTCTTTGAGACTCGCATGAACGAAGCCTTTGGTGACACCAAGTTCTCCGCTGTTCTGGTGGAGCCCCCGCCGCTGAGCCTGCCTGGTGCTGGCCTGAGCGCCCAGGACCTGTCCAGTGGCCCTGGTGATGGCCCCTGA

Related Sequences

bmy_21431T0 Protein

Length: 759 aa      View alignments
>bmy_21431T0
MRDSGSKAATDSQDANQQCCTSCEDNAPATSYCVECSEPLCETCVEAHQRVKYTKDHTVRSTGPAKSRDGERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHKDHQYQFLEDAVRNQRKLLASLVKRLGDKHATLQKNTKEVRSSIRQVSDVQKRVQVDVKMAILQIMKELNKRGRVLVNDAQKVTEGQQERLERQHWTMTKIQKHQEHILRFASWALESDNNTALLLSKKLIYFQLHRALKMIVDPVEPHGEMKFQWDLNAWTKSAEAFGKIVAERPGTNSTGPAPMAPPRAPGPLSKQGSGSSQVSQGGDHSGRKEARGPVGCLSTEVHLLCPQPMEVQEGYGFGSADDPYSSAEPHVSGVKRSRSSDGEVSGLMRKVPRVSLERLDLDLTADSQPPVFKVFPGSTTEDYNLIVIERGAAAVAAGQPGTAPPGAPGAPPLPGMAIVKEEETEAAIGAPPAATEGPETKPVLMALAEGPGAEGPRLASPSGSTSSGLEVVAPEGTSAPAGGPGALDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGCEAVRGLQGGGLGQVPCSPSRSVPSREEWSCSLCHVLPDLKEEDGSLNLDGGDSTGVVAKLSPANQQKCERVLLALFCHEPCRPLHQLATDSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTEDKADVQSIIGLQRFFETRMNEAFGDTKFSAVLVEPPPLSLPGAGLSAQDLSSGPGDGP*