Sequence detailsbmy_21467 (Coding sequence)

Part of scaffold_2995 (SequenceType object (1))

For more information consult the page for scaffold_2995 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

U2AF2ENSTTRG00000000987 (Bottlenosed dolphin)

Gene Details

U2 small nuclear RNA auxiliary factor 2

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000000930, Bottlenosed dolphin)

Protein Percentage 84.34%
cDNA percentage 86.59%
Ka/Ks Ratio 0.37652 (Ka = 0.1196, Ks = 0.3176)

U2AF2ENSBTAG00000002830 (Cow)

Gene Details

splicing factor U2AF 65 kDa subunit

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000003664, Cow)

Protein Percentage 84.34%
cDNA percentage 83.37%
Ka/Ks Ratio 0.14234 (Ka = 0.1116, Ks = 0.7838)

U2AF2 (Minke Whale)

Gene Details

U2 small nuclear RNA auxiliary factor 2

External Links

Gene match (Identifier: BACU006011, Minke Whale)

Protein Percentage 76.05%
cDNA percentage 80.18%
Ka/Ks Ratio 0.32908 (Ka = 0.1839, Ks = 0.5588)

Additional orthologs identified in other species via the OPTIC pipeline.

U2AF2 (Human)   U2af2 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1263 bp    Location:28809..44622   Strand:+
Raw sequence 
>bmy_21467
ATGTCGGACTTCGACGAGTTCGAGCGGCAGCTCAACGAGAATAAGCAAGAGCGTGACAAGGAGAACCGGCACCGGAAGCGCAGCCACAGCCGCTCTCGAAGCCGGGACCGCAAGCGCCGCAGCCGCAGCCGGGACCGGCGCAACCGGGACCAGCGCAGCGCCTCCCGGGACAGGCGGCGCCGAAGCCCCTTGACAACAGCCCCTACTGTTGAAGTTGACAGCGGGGATGAAGCTGTCAACAGACCTGGTTTCGCGGAGGCGGTGGTTGCCCGTGGCCGGGAGGGCGCTGCTGTTGCGCCGGTGCACGGGCGCCCTGCCGTCCTCTCATCCTCGTCTCTTCCTTTTGAAGCTGCCGGTCAGATTCCAGCCACCGCCCTTCTCCCCACCATGACCCCTGACGGTCTGGCTGTGACCCCGACGCCGGTGCCCGTGGTCGGTAGCCAGATGACCAGACAGGCCCGGCGCCTCTATGTGGGCAACATCCCCTTCGGCATCACTGAGGGCCCCGATGTGCCGCCGTGCTGGGGTCGCTCTGCGTCCCGAAGAGTGCTGCCGGGGCGCGCCTCCAAGGAGGGGCTGGGGCGGGCGCGAGTCGTGTCCACTGTGGTCCCGGACTCTGCCCACAAGCTGTTCATCGGGGGCTTACCCAACTACCTGAATGACGACCAGGTAAAAGAGCTGTTGACATCGTTTGGGCCTCTCAAGGCCTTCAACCTGGTCAAGGACAGTGCCACAGGGCTCTCCAAGGGCTACGCCTTCTGTGAGTACGTGGACATCAACGTCACAGATCAGGCCATCGCGGGGCTGAACGGGATGCAGCTGGGGGATAAGAAGCTGCTTGTCCAGAGGGCAAGCGTGGGAGCCAAGAATGCCACGCTGAGTACCATCAACCAGACCCCCGTGACCTTGCAAGTGCCTGGCCTGATGAGCTCCCAGGTGCAGATGGGTGGTCACCCGACTGAGGTCCTGTGCCTCATGAACATGGTCCTGCCCGAGGAGCTGCTGGACGACGAGGAGTACGAGGAGATCGTGGAGGACGTGCGTGACGAATGCAGCAAGTACGGGCTCGTCAAGTCCATCGAGATCCCCCGGCCCGTGGACGGCGTGGAGGTGCCCGGCTGTGGAAAGATCTTCGTGGAGTTCACCTCTGTGTTTGACTGCCAGAAAGCCATGCAGGGCCTGACGGGTCGCAAGTTCGCCAACAGAGTGGTTGTCACAAAATACTGTGACCCCGACTCTTACCACCGCCGGGACTTCTGGTAG

Related Sequences

bmy_21467T0 SequenceType object (3)

Length: 421 aa      View alignments
>bmy_21467T0
MSDFDEFERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRRRSPLTTAPTVEVDSGDEAVNRPGFAEAVVARGREGAAVAPVHGRPAVLSSSSLPFEAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEGPDVPPCWGRSASRRVLPGRASKEGLGRARVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDFW*