Sequence details bmy_21511 (Coding sequence)

Part of scaffold_3027 (Scaffold)

For more information consult the page for scaffold_3027 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LGALS1 ENSTTRG00000004798 (Bottlenosed dolphin)

Gene Details

lectin, galactoside-binding, soluble, 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004518, Bottlenosed dolphin)

Protein Percentage 65.81%
cDNA percentage 76.92%
Ka/Ks Ratio 0.50107 (Ka = 0.2517, Ks = 0.5023)

LGALS1 ENSBTAG00000015089 (Cow)

Gene Details

Galectin-1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000020080, Cow)

Protein Percentage 65.52%
cDNA percentage 74.43%
Ka/Ks Ratio 0.32615 (Ka = 0.2511, Ks = 0.7699)

LGALS1  (Minke Whale)

Gene Details

lectin, galactoside-binding, soluble, 1

External Links

Gene match (Identifier: BACU007657, Minke Whale)

Protein Percentage 65.82%
cDNA percentage 73.84%
Ka/Ks Ratio 0.30086 (Ka = 0.2605, Ks = 0.8658)

Additional orthologs identified in other species via the OPTIC pipeline.

LGALS1 (Human)   Lgals1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 354 bp    Location:123444..115596   Strand:-
Raw sequence 
>bmy_21511
ATGGCTTGTGGTCTTGTCATCAGCAACCTGAACCTCAAATCTGGGAAGTACCTCAGAGTGCTGGGCAAGGTGGCCCTGGACGCCAAGAGCTTCGTGCTGAACCTGGGCAAAGATGGCAACAACCTGTGCCTGCACTTCAAACCCCGCTTCAATGAGCACAGGGACACCAGCACCATCGTGTGTAACAGCAAGGATGGCGGGGCCTGGGGACCCAAGCAGCAGGAGTCTGTCTTCCCCTTCCAGCCTGGAAGTGTTGTGGAGTATGCCGAGTCCTTGAAACCTACATATAAGCAGCAGTACGCTTTACTTGACTCTTATGAAGTATTAATTTTGAGTTTCGCTTTAAAATTTTAA

Related Sequences

bmy_21511T0 Protein

Length: 118 aa      View alignments
>bmy_21511T0
MACGLVISNLNLKSGKYLRVLGKVALDAKSFVLNLGKDGNNLCLHFKPRFNEHRDTSTIVCNSKDGGAWGPKQQESVFPFQPGSVVEYAESLKPTYKQQYALLDSYEVLILSFALKF*