Part of scaffold_3129 (Scaffold)

For more information consult the page for scaffold_3129 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PDLIM1 ENSTTRG00000012118 (Bottlenosed dolphin)

Gene Details

PDZ and LIM domain 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011492, Bottlenosed dolphin)

Protein Percentage 84.97%
cDNA percentage 89.21%
Ka/Ks Ratio 0.64034 (Ka = 0.1015, Ks = 0.1585)

PDLIM1 ENSBTAG00000011182 (Cow)

Gene Details

PDZ and LIM domain protein 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000014850, Cow)

Protein Percentage 85.29%
cDNA percentage 88.4%
Ka/Ks Ratio 0.38151 (Ka = 0.0917, Ks = 0.2404)

Genome Location

Sequence Coding sequence

Length: 618 bp    Location:171213..170596   Strand:-
>bmy_21595
ATGACCACCCAGCAAATAGTCCTCCAGGGCCGGGGACCGTGGGGCTTCTGCCTTGTGGGGGGGAAGGACTTCGAGCAGCCTCTCACCATCTCCCGGGTCACTCCCGGAAGCAAGGCTGCTATAGCTAATTTATGTGTTGGAGATGTAATCACAGCCATCGATGGGGAAAATACCAGCAACATGACGCACCTGGAAGCTCAGGACAAAATCAAGGGCTGCACAGACAACATGACTCTCACAGTAACCAGATCKGAACAGAAAATCTGGTCTCCTCTGGTGACAGAGGAAGGGAAACATCATCCATACAAGATGAATTTAGCCTCTGAACTGCAAGAGGTCCTACACATAGGAAGCGCCCACAACCAGAGYGCCCTGCCTCTTACCGCCTCACCTGCCTCCACTTCTGCCCCCAGGGTCATCACAAACCAGTACAACAACCCAGCTGGCCTCTACTCCTCTGAAAACATCTCCAACTTCAACAGTGCCTTGGAGTCAACGACGGCAGCCAGTGGGCAGGAGACGAATGGCAGAGCATTAGACCATTCTCAGCTTYCAAGCGGACTCGTCATTGATAAAAATCTGACGTTTACAAGATGCCTCAGGAGAAACAAGAGTTAA

Related Sequences

bmy_21595T0 Protein

Length: 206 aa      View alignments
>bmy_21595T0
MTTQQIVLQGRGPWGFCLVGGKDFEQPLTISRVTPGSKAAIANLCVGDVITAIDGENTSNMTHLEAQDKIKGCTDNMTLTVTRSEQKIWSPLVTEEGKHHPYKMNLASELQEVLHIGSAHNQSALPLTASPASTSAPRVITNQYNNPAGLYSSENISNFNSALESTTAASGQETNGRALDHSQLXSGLVIDKNLTFTRCLRRNKS*